Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00389 ATGGCAGAAGTCACCTTCCACCAGCTCCACGAAATTGAAGACGACTCAAATCTCCCTGAACAAACCCTAACTCTAGATGCCATACCTTATTGGTCCCACCACGACTTCGACCTCTACGCATCCGATCCGGAATTCCCGACCTCTGATCACTCCTTTCATCCCCATTTTGCCGTTCATGAAGACGACATGTCTGACCAACTCAACTGTTCTACCATTGCCTTACGAGGCTTGGACGACTTTTCGGACCGGGAATCCATTTCAAATACTGATCTTTTTGACAGAGAGAACCAGGTCAGTTTCGTCATGGATCTGTTCCAGCAGCGAGTGGAACAATCACATGTTACGGCTCGTAGTGATTTGGTATCCGAAGCGCTTAACGACTCGAATTTCGGTGTGATGGAGGAAAATTATGAAGTGGGTATGGATGGGTTGGGGCTTGATTTAGGGTTACGTGTAGGTTTTGATGTGGACAGGGATCATGTGGATCGTAATCACAATGGTGCGTTCATGGTTCAAAGCTACGGGCCCGCTGATAATGTAGATGACGATGATTTCTTCGTCGAGAGGAGAGTTTCTGGATCCAAATCGGGCGAGGGACCCTCCACGGTTTCTGGGGTACAACTAATTGAGAACTGTGCCATGCTTGCTGGGTTCGGGTTAGATTCGGATGAGGAGGATAATGATTGTTTTGGAATTTGTGTGCAATCTGATGATGAAAGTAACGTCCACGAAGCCAGTGATGATGTTTTGAGTATGCCCTTTTGTTGGGATTCGCTTCAATTGGATGATCATAGAGAGAATAATGAAGATTTTGAATGGGAGGAAGTGGATGGTCGACTTGACGAGAGGGAAGTTCTGAGCATGTTTACAGCTGAGGATGAGAGGTCAGTCTCTGTTTCTGTTTCGCCAATAGTTGGCACTGAAGAAGAAGAATTGGGTGTGGTGAGGGTTGGCGGCTTGGAAAACTTGGAGTGGCAAGTTCTGTTGAATGGTAATAATTTTGACAACAGCCTTGATATGGAACATGATGCTGAACCTTATTTTGGTGAGAATGATGATTACATTAATACAGCTGAGTATGAGATGACATTTGGTCAATTTACTGATAATGATAACCCTTTAACTGGAAGGCCTCCAACTGCTAAATCTGTTGTCCAGAATCTCCCTTTTGTAGTTTTGACTAAAGAAGATGTTGAGGACGATAAGACACTTTGTGCAATCTGTAAGGATGACTTTAATGTTGGAGAACAAGCAAGGAAGTTGCCATGTGCACATCGATACCACAGTGACTGCATTATACCGTGGTTGGGTATTCGAAATACATGTCCCGTTTGCCGATATGAGTTTCCAACTGATGACGCTGACTACGAGCGTCGGAGGAACCAAAGATCTGGTGGCCTGTGA 1404 0.4509 MAEVTFHQLHEIEDDSNLPEQTLTLDAIPYWSHHDFDLYASDPEFPTSDHSFHPHFAVHEDDMSDQLNCSTIALRGLDDFSDRESISNTDLFDRENQVSFVMDLFQQRVEQSHVTARSDLVSEALNDSNFGVMEENYEVGMDGLGLDLGLRVGFDVDRDHVDRNHNGAFMVQSYGPADNVDDDDFFVERRVSGSKSGEGPSTVSGVQLIENCAMLAGFGLDSDEEDNDCFGICVQSDDESNVHEASDDVLSMPFCWDSLQLDDHRENNEDFEWEEVDGRLDEREVLSMFTAEDERSVSVSVSPIVGTEEEELGVVRVGGLENLEWQVLLNGNNFDNSLDMEHDAEPYFGENDDYINTAEYEMTFGQFTDNDNPLTGRPPTAKSVVQNLPFVVLTKEDVEDDKTLCAICKDDFNVGEQARKLPCAHRYHSDCIIPWLGIRNTCPVCRYEFPTDDADYERRRNQRSGGL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00389 467 Pfam Ring finger domain 405 446 IPR001841 -
Pte3g00389 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 452 IPR013083 -
Pte3g00389 467 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 326 450 - -
Pte3g00389 467 SUPERFAMILY RING/U-box 384 452 - -
Pte3g00389 467 SMART ring_2 405 445 IPR001841 -
Pte3g00389 467 ProSiteProfiles Zinc finger RING-type profile. 405 446 IPR001841 -
Pte3g00389 467 FunFam E3 ubiquitin-protein ligase RING1-like 366 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00389 Pte-Chr3 3211561 3214486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00389 7 452 C3H Transcription Factor Family AT5G60820 35.169 6.03e-62 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00389 - - qsa:O6P43_002270 624.78