Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00385 ATGGAACCAATGGATATCGTTGGAAAATCAAAGGAGGACGCCTCGCTTCCGAAAGCGACCATGACAAAAATTATCAAGGAGATGTTACCTCCAGATGTACGTGTCGCAAGAGATGCCCAAGACCTTTTTATTGAATGTTGTGTAGAATTTATAAACCTGGTTTCATCAGAATCTAATGAAGTCTGTGGCAGAGAAGAGAGAAGGACAATTGCACCAGAACATATGTTAAAGGCTTTAGATGTTTTAGGATTTAGCGAGTACATTGAGGAAGTCTATGCAGCATATGAACAGCACAAACTGGAGACCATGGATACCTTGAGGAGTGGCAAGTGGAGCACTGGTGCTGCGATGACTGAAGAAGAAGCAGTAGCAGAGCAACAAAGGATGTTTGCAGAGTCACGTGCAAGAATGAATGACGAGATTGCATCCAAGCAGGAGGATCCTAATCAAGCTTTAGAAAGCTAA 465 0.428 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLFIECCVEFINLVSSESNEVCGREERRTIAPEHMLKALDVLGFSEYIEEVYAAYEQHKLETMDTLRSGKWSTGAAMTEEEAVAEQQRMFAESRARMNDEIASKQEDPNQALES* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00385 154 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
Pte3g00385 154 FunFam Negative cofactor 2 beta 6 142 - -
Pte3g00385 154 PANTHER PROTEIN DR1 HOMOLOG 1 153 IPR044255 -
Pte3g00385 154 MobiDBLite consensus disorder prediction 126 154 - -
Pte3g00385 154 Gene3D Histone, subunit A 4 146 IPR009072 GO:0046982
Pte3g00385 154 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00385 Pte-Chr3 3171383 3175019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00385 1 145 CCAAT-DR1 Transcription Factor Family AT5G23090 82.877 6.31e-87 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte3g00385 CBFD_NFYB_HMF 1.6e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00385 K21751 - csav:115709923 264.618