Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00374 ATGGCAGAAGTCACCTTCCACCAGCTCCACGAAATTGAAGACGACTCAAATCTCCCTGAACAAACCCTAACTCTAGATGCCATACCTTATTGGTCCCACCACGACTTCGACCTCTACGCATCCGATCCGGAATTCCCGACCTCTGATCACTCCTTTCATCCCCATTTTGCCGTTCATGAAGACGACATGTCTGACCAACTCAACTGTTCTACCATTGCCTTACGAGGCTTGGACGACTTTTCGGACCGGGAATCCATTTCAAATACTGATCTTTTTGACAGAGAGAACCAGGTCAGTTTCGTCATGGATCTGTTCCAGCAGCGAGTGGAACAATCACATGTTACGGCTCGTAGAGATTTGGTATCCGAAGCGCTTAACGACTCGAATTTCGGTGTGATGGAGGAAAATTATGAAGTGGGTATGGATGGGTTGGGGCTTGATTTAGGGTTACGTGTAGGTTTTGATGTGGACAGGGATCATGTGGATCGTAATCACAATGGTGCGTTCATGGTTCAAAGCTACGGGCCCGCTGATAATGTAGATGACGATGATTTCTTCGTCGAGAGGAGAGTTTCTGGATCCAAATCGGGCGAGGGACCCTCCATGGTTTCTGGGGTACAACTAATTGAGAACTGTGCCATGCTTGCTGGGTTCGGGTTAGATTCGGATGAGGAGGATAATGATTGTTTTGGAATTTGTGTGCAATCTGATGATGAAAGTAACGTCCACGAAGCCAGTGATGATGTTTTGAGTATGCCCTTTTGTTGGGATTCGCTTCAATTGGATGATCATAGAGAGAATAATGAAGATTTTGAATGGGAGGAAGTGGATGGTCGACTTGACGAGAGGGAAGTTCTGAGCATGTTTACAGCTGAGGATGAGAGGTCAGTCTCTGTTTCTGTTTCGCCAATAGTTGGCACTGAAGAAGAAGAATTGGGTGTGGTGAGGGTTGGCGGCTTGGAAAACTTGGAGTGGCAAGTTCTGTTGAATGGTAATAATTTTGACAACAGCCTTGATATGGAACATGATACTGAACCTTATTTTGGTGAGAATGATGATTACATTAATACAGCTGAGTATGAGATGACATTTGGTCAATTTACTGATAATGATAACCCTTTAACTGGAAGGCCTCCAACTGCTAAATCTGTTGTCCAGAATCTCCCTTTTGTAGTTTTGACTAAAGAAGATGTTGAGGACGATAAGACACTTTGTGCAATCTGTAAGGATGACTTTAATGTTGGAGAACAAGCAAGGAAGTTGCCATGTGCACATCGATACCACAGTGACTGCATTATACCGTGGTTGGGTATTCGAAATACATGTCCTGTTTGCCGATATGAGTTTCCAACTGATGACGCTGACTACGAGCGTCGGAGGAACCAAAGATCTGGTGGCCTGTGA 1404 0.4487 MAEVTFHQLHEIEDDSNLPEQTLTLDAIPYWSHHDFDLYASDPEFPTSDHSFHPHFAVHEDDMSDQLNCSTIALRGLDDFSDRESISNTDLFDRENQVSFVMDLFQQRVEQSHVTARRDLVSEALNDSNFGVMEENYEVGMDGLGLDLGLRVGFDVDRDHVDRNHNGAFMVQSYGPADNVDDDDFFVERRVSGSKSGEGPSMVSGVQLIENCAMLAGFGLDSDEEDNDCFGICVQSDDESNVHEASDDVLSMPFCWDSLQLDDHRENNEDFEWEEVDGRLDEREVLSMFTAEDERSVSVSVSPIVGTEEEELGVVRVGGLENLEWQVLLNGNNFDNSLDMEHDTEPYFGENDDYINTAEYEMTFGQFTDNDNPLTGRPPTAKSVVQNLPFVVLTKEDVEDDKTLCAICKDDFNVGEQARKLPCAHRYHSDCIIPWLGIRNTCPVCRYEFPTDDADYERRRNQRSGGL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00374 467 Pfam Ring finger domain 405 446 IPR001841 -
Pte3g00374 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 452 IPR013083 -
Pte3g00374 467 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 327 450 - -
Pte3g00374 467 SUPERFAMILY RING/U-box 384 452 - -
Pte3g00374 467 SMART ring_2 405 445 IPR001841 -
Pte3g00374 467 ProSiteProfiles Zinc finger RING-type profile. 405 446 IPR001841 -
Pte3g00374 467 FunFam E3 ubiquitin-protein ligase RING1-like 366 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00374 Pte-Chr3 3116175 3119109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00374 250 452 C3H Transcription Factor Family AT5G60820 47.907 1.42e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00374 - - qsa:O6P43_002270 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00374 3 3116175 3119109 Pte3g00374 3 3116175 3119109 RCT