Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00371 ATGGAACCAATGGATATCGTTGGAAAATCAAAGGAGGACGCCTCGCTTCCGAAAGCGACCATGACAAAAATTATCAAGGAGATGTTACCTCCAGATGTACGTGTCGCAAGAGATGCCCAAGACCTTTTTATTGAATGTTGTGTAGAATTTATAAACCTGGTTTCATCAGAATCTAATGAAGTCTGTGGCAGAGAAGAGAGAAGGACGATTGCCCCAGAGCATGTGTTGAAGGCTTTAGATGTTTTAGGATTTAGCGAGTACATTGAGGAAGTCTATGCAGCATATGAACAGCACAAACTGGAGACCATGGATACCTTGAGGAGTGGCAAGTGGAGCACTGGTGCTGCGATGACTGAAGAAGAAGCAGTAGCAGAGCAACAAAGGATGTTTGCAGAGTCACGTGCAAGAATGAATGACGAGATTGCATCCAAGCAGGAGGATCCTAATCAAGCTTTAGAAAGCTAA 465 0.4387 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLFIECCVEFINLVSSESNEVCGREERRTIAPEHVLKALDVLGFSEYIEEVYAAYEQHKLETMDTLRSGKWSTGAAMTEEEAVAEQQRMFAESRARMNDEIASKQEDPNQALES* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00371 154 PANTHER PROTEIN DR1 HOMOLOG 1 153 IPR044255 -
Pte3g00371 154 MobiDBLite consensus disorder prediction 126 154 - -
Pte3g00371 154 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Pte3g00371 154 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
Pte3g00371 154 FunFam Negative cofactor 2 beta 6 142 - -
Pte3g00371 154 Gene3D Histone, subunit A 4 146 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00371 Pte-Chr3 3085794 3089439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00371 1 145 CCAAT-DR1 Transcription Factor Family AT5G23090 83.562 1.59e-87 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte3g00371 CBFD_NFYB_HMF 2.6e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00371 K21751 - csav:115709923 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00371 3 3085794 3089439 Pte3g00371 3 3085794 3089439 RCT