Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00357 ATGAAAACTAATTTAGCTCAGAAAAAGGCTCGAGTTGGAACCATGTCACAGACAAACTGGGAAGCCGATAAAATGTTGGACGTCTATATCTATGACTATCTTGTGAAAAGGAAGTTACATGCTACTGCGAAGGCATTTCAAGCTGAAGGGAAGGTATCGACAGACCCTGTGGCTATAGATGCCCCTGGAGGCTTTCTTTTCGAATGGTGGTCTGTCTTCTGGGACATATTTATTGCTAGGACAAATGAAAAGCATTCCGAACCTGCTACATCCTACATTCAGACTCAGGTAAGCAAGGCCAGGGAACTGCAGAAGAAACAGCAGCAAGAACATCAGAATCCTCAGCAGCATCAACAAATGCAAATGCAGCTCTTGATGCAAAGGCATGCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAAGGGATGGGACACAGCTTGTTAATGGCAGCAGTAGTAGTCTTGTTGGTGATGACTCTATGATGAGGCAGAAACATGCAACCGCTAACTCAGTAGCAGCCAAAATGTATGAGGAGGGCTTAAAGCATCCATCTCAAAAAGATGTTTTGGATGATGCGACTAACAAGAGGGTAGGAGACAACATTAGTCAGCTTCTGGATCCTAATCATGCTTCATTGTTTAAAGCAGCTGCTGGCCAGCCTCCTGGACAAACACTAATAGGTCGAGGTATACCGGGAAATCTCCAACAAGTGCAAAATCGCAATCAACAGCTTTCTGGGAGCGCATCAGTGGATTTAAAGAATGAGATGAATCCGATGATGAGCCCACGCACCACTGGTTCCGAAGGATCTGTAATTGGAGTTCATGGTTCTAATCAAGGGAGTGGCAATATAACTCTTAAAGGATGGCCTTTGACGGGATTTGAGCAGCTTCGCTCTCTCCAGCAAAAGACATTAATGCAATCTCCTCAGTCCTTTAATCAACTTCAGCTACAGCAACAGCTTATGCTCCGTGCACAGCAGCAAAGTATGGCATCATCATCTGCCAATGAATTAGAAAGTAGGAGAATAAGAATGCTCATTAACAATCAAAATATGGGTGCTGCGAAGGATGGCCTTTTAAGTAATGTTGGTGACTTAGTTCCAAATATGGGATCACCAATGCAAGCTGGTTGCTCTGTATTGCCTCATTCTGACTCAGATATGCTACTCAAGTTACATCAGCAGCAAATGCAGCAAAACAGTCAACAGCAGCAACAATTTTCACAACATCCTCTTTCAAGTCAGCAATCTCAAAATCATCTCCAGCAGACAGACAAAATCATTGCTGGTGGTAGCATGTCAGCTGATGGTAGCTTGTCAAACACATTTCAAGGAAATGATCAGGCTTCCAAAAATCAAATTGGACGAAAGAGAAAGCAAGCGGTGTCATCTTCAGGTCCTGCCAACAGTTCTGGTACTGCAAACACTACTGGACCATCCCCTAGTTCACCATCCACACCTTCAACACACACACCGGGAGATGCAATGTCAATGCCAACCTTGCAGCAGAATGCATCTTCCAAGTCTTTGCTTATGTTTGGTTCTGATGGTTTGGGTTCACTCTCAGCACAGAATCAAATGGCTGATATAGACCGATTTGTGGGTGATGGCTCCTTGGATGACAATGTCGAGTCCTTTTTGTCTCCCGATGGAGGAGACCCTAGAGATAGAGTTGGTAATTGTCAGGATATGGGTAAAGGCTTCACCTTTAAAGAGATCCAGCTCGTTCATGCAAGCACCAGTAAAGTTGAGTGCTGTGACTTCTCATCAGATGGAAAATTACTTGCTACAGGTGGCCATGATAGAAAGGTGTCCTTATGGTGCACGGAATCATTCACTTTGAAGTCTAACCTAGAAGAGCATTCTCAGTGGATTACTGATGTGAGATTCAGTCCAAGCATGTCTCGTCTTGCTACATCTTCAGCTGACAGAACTGTTAGGATTTGGGATACTGATAATCCTGGCTATTCTCTCCGAACATTTGCTGGACATTCAACTACTGTCATGTCACTGGACTTCCACCCAAGTAAAGAAGATCTCATCTTTTCTTGTGATAATAATAACGAGATTAGATATTGGAGTATCAAGAATGGTGGCTGTGCCGGGGTTTTCAAGGGTGGCGCAACTCAGATGAGATTTCAACCTCGTCATGGAAGGCTTCTGGCAGCTGCAGTGGAGAATCTCATATCCATTCTTGACGTTGAGACCTTAGCTTGTAGGCTTAAACTACAGGGACACAAAAACCTCGTTCACTCTGTCTGCTGGGATTCTTCTGGTGATTTTCTTGCATCGGTGAGTGATGACTTGGTAAGAATTTGGACAGTCGGTTCTGGTAGTAAAGGGGAATGCGTTCATGAGTTCAATTCAGCAGGCAACAAATTCAACACGTGTGCCTTCCATCCTTCTCATCCTTCTCTGTTGGTTATTGGTTGTTACGAGACTCTGGAGCTTTGGAACTTTGGTGAAAACAAGACAATGACTATACATGCGCATGACAAGTTAGTATCTTCTTTGGCTGTGTCAAATGTTTCTGGGTTAGTGGCTTCAGCCAGTCATGACAAGTGCGTGAAACTCTGGAAGTAA 2583 0.4429 MKTNLAQKKARVGTMSQTNWEADKMLDVYIYDYLVKRKLHATAKAFQAEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEPATSYIQTQVSKARELQKKQQQEHQNPQQHQQMQMQLLMQRHAQQQQQQQQQRRDGTQLVNGSSSSLVGDDSMMRQKHATANSVAAKMYEEGLKHPSQKDVLDDATNKRVGDNISQLLDPNHASLFKAAAGQPPGQTLIGRGIPGNLQQVQNRNQQLSGSASVDLKNEMNPMMSPRTTGSEGSVIGVHGSNQGSGNITLKGWPLTGFEQLRSLQQKTLMQSPQSFNQLQLQQQLMLRAQQQSMASSSANELESRRIRMLINNQNMGAAKDGLLSNVGDLVPNMGSPMQAGCSVLPHSDSDMLLKLHQQQMQQNSQQQQQFSQHPLSSQQSQNHLQQTDKIIAGGSMSADGSLSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTTGPSPSSPSTPSTHTPGDAMSMPTLQQNASSKSLLMFGSDGLGSLSAQNQMADIDRFVGDGSLDDNVESFLSPDGGDPRDRVGNCQDMGKGFTFKEIQLVHASTSKVECCDFSSDGKLLATGGHDRKVSLWCTESFTLKSNLEEHSQWITDVRFSPSMSRLATSSADRTVRIWDTDNPGYSLRTFAGHSTTVMSLDFHPSKEDLIFSCDNNNEIRYWSIKNGGCAGVFKGGATQMRFQPRHGRLLAAAVENLISILDVETLACRLKLQGHKNLVHSVCWDSSGDFLASVSDDLVRIWTVGSGSKGECVHEFNSAGNKFNTCAFHPSHPSLLVIGCYETLELWNFGENKTMTIHAHDKLVSSLAVSNVSGLVASASHDKCVKLWK* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00357 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 828 860 - -
Pte3g00357 860 MobiDBLite consensus disorder prediction 109 157 - -
Pte3g00357 860 MobiDBLite consensus disorder prediction 87 102 - -
Pte3g00357 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 828 860 IPR001680 GO:0005515
Pte3g00357 860 SUPERFAMILY WD40 repeat-like 569 860 IPR036322 GO:0005515
Pte3g00357 860 SMART Lish 22 54 IPR006594 GO:0005515
Pte3g00357 860 MobiDBLite consensus disorder prediction 394 500 - -
Pte3g00357 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 618 653 IPR001680 GO:0005515
Pte3g00357 860 ProSiteProfiles LIS1 homology (LisH) motif profile. 22 54 IPR006594 GO:0005515
Pte3g00357 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 576 607 - -
Pte3g00357 860 SMART WD40_4 569 608 IPR001680 GO:0005515
Pte3g00357 860 SMART WD40_4 654 694 IPR001680 GO:0005515
Pte3g00357 860 SMART WD40_4 697 733 IPR001680 GO:0005515
Pte3g00357 860 SMART WD40_4 736 774 IPR001680 GO:0005515
Pte3g00357 860 SMART WD40_4 611 650 IPR001680 GO:0005515
Pte3g00357 860 SMART WD40_4 780 819 IPR001680 GO:0005515
Pte3g00357 860 SMART WD40_4 821 860 IPR001680 GO:0005515
Pte3g00357 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 618 653 - -
Pte3g00357 860 PANTHER TRANSCRIPTION ACTIVATOR MSS11 13 860 - -
Pte3g00357 860 CDD WD40 580 860 - -
Pte3g00357 860 Pfam LisH 24 50 IPR006594 GO:0005515
Pte3g00357 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 576 607 IPR001680 GO:0005515
Pte3g00357 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 743 775 IPR001680 GO:0005515
Pte3g00357 860 Gene3D - 703 860 IPR015943 GO:0005515
Pte3g00357 860 Gene3D - 550 702 IPR015943 GO:0005515
Pte3g00357 860 ProSitePatterns Trp-Asp (WD) repeats signature. 637 651 IPR019775 -
Pte3g00357 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 703 IPR001680 GO:0005515
Pte3g00357 860 Pfam WD domain, G-beta repeat 739 773 IPR001680 GO:0005515
Pte3g00357 860 Pfam WD domain, G-beta repeat 824 860 IPR001680 GO:0005515
Pte3g00357 860 Pfam WD domain, G-beta repeat 657 693 IPR001680 GO:0005515
Pte3g00357 860 Pfam WD domain, G-beta repeat 577 607 IPR001680 GO:0005515
Pte3g00357 860 Pfam WD domain, G-beta repeat 617 650 IPR001680 GO:0005515
Pte3g00357 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 698 - -
Pte3g00357 860 MobiDBLite consensus disorder prediction 87 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00357 Pte-Chr3 2973772 2981600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00357 572 859 Miscellaneous Gene Families AT5G08390 25.249 1.51e-18 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pte3g00357 WD40 0.013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00357 - - pvy:116116977 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00357 3 2973772 2981600 Pte3g00357 3 2973772 2981600 RCT