Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00347 ATGACTATAGACGACGAGAGCTCCATATACATTGGAGGTTTACCGTACGACGCCACTGAAGAGAGCATTCGAAGAATTTTCGATTTGTATGGTGCTATTGTTGCTGTTAAGATTATTAATGATCAATCGGCTAGAGGAAAATGCTATGGCTTTGTTACTTTCACCAATCCACGGTCAGCCATTAATGCTATTGATGATATGAATGGCAGGACTATTGATGGACGTGTGATGAAAGTAAATGGCGTAAGGACTAGAGGGGCCAGATCAAATTTCAGCAGACATCGTTTTCATCAGAACATTGACAGGAATGGGGATTGGGGTCAGAGTGGTGCTAGAGATCGAGAGAGCAATTATGACCGAGATAGGGACCGGTACAGGAACCGAGACAGAAATTGGTCTAGAGAACGTGATCGATCTCGAGAGGGTGATGATGAGAGAGATAGAAGACATGAGCCTTTACGTGACCATGAGGAAGCAAGGCATCGCGTGTTAAATACAAATGGACACCAGCATAGAGGAAATGATAATTATGAACGAGAGCCTAGTGGGAATCATGCTCTTGAAAAGGAAAAAGATCATTCCTTGAACTTGGAGAAAGACAGAGAGATGGGCAGACTCAGTGACCATGATATAAATATTGATGAGGATAGACATGGAATTCCAAGGAGAAAGAACAGTATTAGCAGCAATGACCTTCCCAATGTGGAGCATTCATCAGGTTCAGATGGTGACCATAATGAGCAGGTTAAGCTTCAGTTGGAGAGATCGAGCCAGAGAATGGAACAGATGAAAAAGGAGGTTTCTATCTTGGAAGGAATGTTGGAGGAGAAAGGACTTGTTGTTTTGGATCTGCAGAAAAAATCCAAGATCCTGGAAGATGCTGTAATTAGTGCCAAGAAGCACTCTTCCTACCGTCAGATGCAGTTGACCAAGCTGCAGAAGTCTCTTCTCCAAGTTAACGACTATACTCAAAGGCTTAAAAGCTGTGAAAGAGAACTTCAGGGCCTTGTTGATAGAGCAACGCAAGAATTTGAAAGTGATGTTGGCACCTTAACGCTTGGTGTCCTGACGAACGGAAATGCGTGA 1086 0.4328 MTIDDESSIYIGGLPYDATEESIRRIFDLYGAIVAVKIINDQSARGKCYGFVTFTNPRSAINAIDDMNGRTIDGRVMKVNGVRTRGARSNFSRHRFHQNIDRNGDWGQSGARDRESNYDRDRDRYRNRDRNWSRERDRSREGDDERDRRHEPLRDHEEARHRVLNTNGHQHRGNDNYEREPSGNHALEKEKDHSLNLEKDREMGRLSDHDINIDEDRHGIPRRKNSISSNDLPNVEHSSGSDGDHNEQVKLQLERSSQRMEQMKKEVSILEGMLEEKGLVVLDLQKKSKILEDAVISAKKHSSYRQMQLTKLQKSLLQVNDYTQRLKSCERELQGLVDRATQEFESDVGTLTLGVLTNGNA* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00347 361 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 99 - -
Pte3g00347 361 MobiDBLite consensus disorder prediction 172 224 - -
Pte3g00347 361 MobiDBLite consensus disorder prediction 94 165 - -
Pte3g00347 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Pte3g00347 361 CDD RRM_SF 9 80 - -
Pte3g00347 361 MobiDBLite consensus disorder prediction 88 248 - -
Pte3g00347 361 Coils Coil 246 273 - -
Pte3g00347 361 SUPERFAMILY RNA-binding domain, RBD 4 110 IPR035979 GO:0003676
Pte3g00347 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Pte3g00347 361 PANTHER GEO13361P1-RELATED 6 176 - -
Pte3g00347 361 SMART rrm1_1 8 80 IPR000504 GO:0003723
Pte3g00347 361 Gene3D - 2 98 IPR012677 -
Pte3g00347 361 Coils Coil 312 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00347 Pte-Chr3 2847747 2851205 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00347 2 98 Eukaryotic Initiation Factors Gene Family AT1G71770 27.835 3.39e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00347 - - qsa:O6P43_002318 362.073