Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00335 ATGAAACGGGAAGTACAGCTAGAGTCGTCGACAGCTACGCAAAACATCAGCGATTCCGATCCATTACTTGAGAACCAGGAAGAATCGGCGCCGTTAAGCTCAAATGAGATCCACGATCATGAGGATGTTGAGGGCGGCTCTCTTCCGTGTTGTCGAATTTGCCTTGAAAGTGATTCTGAGCCAGGAGATGAATTGATATCTCCATGCATGTGCAAAGGCACTCAGCAATTTGTCCATCGTTCTTGCCTTGATCATTGGCGGTCAGTGAAGGAAGGCTTTGCTTTTTCACATTGCACAACTTGTAAGGCACAATTTCACCTCCGAGTTGAATCATACGAGGACAACTCTTGGCGTAAAATAAAGTTCCGGATCTTCGTTGCTAGGGATGTTTTTCTTGTCTTTGTGGCAGTACAAACTGTGATTGCTGCATTTGCTGTTTTTGCATACTTAATGGATAAAGATGGGTCCTTCAGGAATTCTTTCAACGATAGTTGGGATCGTATACTATCAAAACATCCCATACCATTTTATTATTGTATAGGAGTACTGTCTTTCTTTGTGTTAATTGGATTTGCTGGTCTCGTACTACACTGCTCTTCCCTCAATGCTAATGACCAACGAATGGCTGGCTGCCAGAACTGTTGTTATGGATGGGGCATCTTAGATTGTTTTCCAGCATCAATGGAGGCATGCTTTGCCCTGGTGGTTGTTTTCGTGGTGATCTTCGCTATTCTTGGCATTGCCTATGGTTTCCTTGCAGCGACCATGGCCATTCAAAGAATTTGGCAGAGACACTACCACATTCTTACGAAGAGGGAGCTAACAAAGGAGTACGTAGTGGAGGATATGAATGGCAATTACACTCCACCAAAGTTGGACGAGGAACATGAAGAACGCCTTAAAATGCTGAAGCTTTTGTGA 921 0.4397 MKREVQLESSTATQNISDSDPLLENQEESAPLSSNEIHDHEDVEGGSLPCCRICLESDSEPGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYEDNSWRKIKFRIFVARDVFLVFVAVQTVIAAFAVFAYLMDKDGSFRNSFNDSWDRILSKHPIPFYYCIGVLSFFVLIGFAGLVLHCSSLNANDQRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDMNGNYTPPKLDEEHEERLKMLKLL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00335 306 Pfam RING-variant domain 51 101 IPR011016 GO:0008270
Pte3g00335 306 ProSiteProfiles Zinc finger RING-CH-type profile. 43 108 IPR011016 GO:0008270
Pte3g00335 306 MobiDBLite consensus disorder prediction 7 32 - -
Pte3g00335 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 115 IPR013083 -
Pte3g00335 306 SUPERFAMILY RING/U-box 48 106 - -
Pte3g00335 306 SMART ringv_2 50 102 IPR011016 GO:0008270
Pte3g00335 306 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 306 - -
Pte3g00335 306 MobiDBLite consensus disorder prediction 1 33 - -
Pte3g00335 306 CDD RING_CH-C4HC3_MARCH 51 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00335 Pte-Chr3 2756878 2760182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00335 1 307 C3H Transcription Factor Family AT1G11020 77.329 1.57e-169 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00335 - - qsa:O6P43_023044 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00335 3 2756878 2760182 Pte3g00335 3 2756878 2760182 RCT