Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00326 ATGCATTCCGAGTATGTACAGCAGCCTCCATTCAAAAGACAAAGGAGTTCAGAACCATCCAATGCGGTAGCGTCCGCGAACTATAGGTTGCCTCCGCTAAATCTTCCTATCAATAAAGGGGCTAACCGTATTTTCTATAAGACCCGCATGTGTGCAAAGTTTAGGCTTGGTGGTACTTGTAGGAATGGTGAGAATTGCAACTTTGCTCATGGAACTGAAGACATGCGACAGCCACCGCCAAATTGGCAAGAGCTCGCTGGTTTAGGCGGTGAAGAGGAACGACCTCCAGCAAATCGGAATGAAGACCACAGAATCATACAGAAGATGAAGATATGCAAGAAATATTACAATGGGGAGGAGTGCCCTTATGGGGAAAGGTGTAATTTTCTCCATGAAGATCCAGCTAAGTTCAGAGAAGGTTCTGGGTGGTTTAGACAGAACTCAGCGATAAGCATACGGACTAATACATCGCAAATGACATATCCAAATGGTTCGAACAACAACAATAGTATTGATTTGAATTTTGACAATGATAAGTCTGTCAACCCAACTTGTTATATGGACCGGGTTATTGTGAAGCCTGCCGCTTCCTGGAAGACCAAGTTATGTGTCAAGTGGGAGACACATCTATGCCCCCATGGTGAGAAATGTCACTTAGCTCATGGCCAAGCAGATCTGCAATTTCCCGATGGTCGCGTTGAAGCAGAAGCCAACGGTGCAATTGCTGTCTCTAAATTGGCCAATGATGTTTCCGTTGCTAATGCAAGAAGCTTGTCTGCTCCTGATAAAGATAAACAAAGCATGAATTGCTTACTCAAATTGAAAGGACCCAAGAAGATCAATCGGATATATGCAGATTGGCTCGATGATTTGTCTCTTGTGCACAATTTGCATAGTAAAGTGTAG 906 0.4382 MHSEYVQQPPFKRQRSSEPSNAVASANYRLPPLNLPINKGANRIFYKTRMCAKFRLGGTCRNGENCNFAHGTEDMRQPPPNWQELAGLGGEEERPPANRNEDHRIIQKMKICKKYYNGEECPYGERCNFLHEDPAKFREGSGWFRQNSAISIRTNTSQMTYPNGSNNNNSIDLNFDNDKSVNPTCYMDRVIVKPAASWKTKLCVKWETHLCPHGEKCHLAHGQADLQFPDGRVEAEANGAIAVSKLANDVSVANARSLSAPDKDKQSMNCLLKLKGPKKINRIYADWLDDLSLVHNLHSKV* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00326 301 SUPERFAMILY CCCH zinc finger 43 77 IPR036855 GO:0046872
Pte3g00326 301 MobiDBLite consensus disorder prediction 9 23 - -
Pte3g00326 301 ProSiteProfiles Zinc finger C3H1-type profile. 45 73 IPR000571 GO:0046872
Pte3g00326 301 ProSiteProfiles Zinc finger C3H1-type profile. 197 224 IPR000571 GO:0046872
Pte3g00326 301 ProSiteProfiles Zinc finger C3H1-type profile. 106 134 IPR000571 GO:0046872
Pte3g00326 301 SMART c3hfinal6 106 133 IPR000571 GO:0046872
Pte3g00326 301 SMART c3hfinal6 197 223 IPR000571 GO:0046872
Pte3g00326 301 SMART c3hfinal6 45 72 IPR000571 GO:0046872
Pte3g00326 301 SUPERFAMILY CCCH zinc finger 197 227 IPR036855 GO:0046872
Pte3g00326 301 Gene3D - 193 228 - -
Pte3g00326 301 Gene3D - 39 77 - -
Pte3g00326 301 FunFam Zinc finger CCCH domain-containing protein 40 77 - -
Pte3g00326 301 Gene3D - 96 186 - -
Pte3g00326 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 46 71 IPR000571 GO:0046872
Pte3g00326 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 107 131 IPR000571 GO:0046872
Pte3g00326 301 FunFam Zinc finger CCCH domain-containing protein 39 103 135 - -
Pte3g00326 301 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 141 IPR045877 GO:0003729
Pte3g00326 301 MobiDBLite consensus disorder prediction 1 23 - -
Pte3g00326 301 SUPERFAMILY CCCH zinc finger 106 133 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00326 Pte-Chr3 2709494 2711495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00326 42 154 C3H Transcription Factor Family AT1G68200 27.434 5.68e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte3g00326 zf-CCCH 9.1e-07 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00326 3 2709494 2711495 Pte3g00326 3 2709494 2711495 RCT