Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00319 ATGATAATGGCTTGTTCCTCGGACTATGGTTTCGACTTGAATCAAAACCAAGATCTCTCGGCTCAGCCCACTTATGTTCCTCCCCACCTAAGGAACAAACCCTTTCCTGTCTCTGCTGCTCATAACCCGACTTCGAGTTTCGGTGATCATTCCTTCCCAGGGCAACCCCGATTCTCAGGTTACAACCGCTCCTCTGCTTATCCGGTTTCTTCTAACCAGCAAGTTTGGAACGGTTCGGCTCGGGGTCGTGGTCGGGGTCGTGGTTATGGTCGTGGAAGATGTGGGTTTTTTAGTCAGGGGGTATTACCCCGTGAGTCCTTTCACTCGGACCCATATGTTGATAGGGTTACATCGGATGTTTCTGACAAGTTTTCTGGGTTGCAATTGACTGATTGTGATGCGGATGGCACCCTCAACTTCGATGCCTATGAAGATGTTCCTGTCGAGGCCACTGGCTCAGACATACCGCCACCCGTGACTGCGTTCGATGAAATGGACTTGGCTGAGGCACTCAGCACCAACATCAAGCGTTGCAGTTACGTGAAACCTACTCCCATTCAGCGCCACGCTCTACCCATTGCTCTTGCTGGCCGTGACTTAATGGCTTGTGCTCAGACCGGATCAGGGAAGACAGCTGCTTTCTGCTTTCCTATTATTTCTGGGCTTTTGAAAAATTGTTACCCAGCACCTAGTGGAAGCGTAGCTCACCCTTCTGCTCTTATACTCTGCCCAACTAGGGAGTTGGCTTGCCAGATAAATGATGAGGCCAAAAAGTTTGCATATCAGACTGGCCTTAAGCTCGCAGTTGCTTATGGCGGGGCACCAATGGGTCGACAGTTCCGAAATCTGGAATTGGGTGTGGACATCTTAGTTGCCACTCCTGGGCGGTTGGCTGATATGATTGAAAGGGGAAGAGTTTCACTTGAGAGGATAAAATATCTTGCGCTGGATGAGGCTGATAGGATGTTGGACATGGGATTCGTGCCGCAGATTAGGCAGATTGTCATGCAAATGGGCATGCCTGCACCAGGTGCAAGACAAACCATGCTGTTTAGTGCTACATTCCCAAATGAGATACAGAGACTTGCATCTGAATTTCTCTCAAATTACATATTTCTCTGTGTTGGGAGAGTTGGTTCCAGCACTGAACTGATTGCACAGAGAGTTGAACGTGTGGAGGACATAAATAAAGGAAATCGTCTCTTTGATCTTCTTCAGACTCACAAAGCAAATGGAACCCACGGAAAGCAAGTCTTGACTCTTGTTTTTGTGGAGACAAAGAAAGGAGCAGATGCACTAGAGAGCTGGCTTCTGAGAAAGGGCTTGTCTGCCGTAGCCATACATGGAGACAAAGTTCAAATGGAACGAGAACAAGCTTTAAGGTCTTTCAAGAGTGGTGCTACTCCTATTTTAGTGGCGACAGATGTAGCTTCAAGAGGTCTGGACATCCCACAAGTAGCCCATGTCATCAACTTTGATTTACCGAAGGACATTGATCACTATGTTCATAGGATTGGCAGAACAGGCCGCGCTGGTAAATCTGGTGTAGCAACTGCCTTCTTCAGTGAGAAAAACTTGCCTCTTGCCAAGCCCCTTGTGGAACTCATGCAGGAAGCTAATCAGGAAGTTCCAGTTTGGCTAAACCAATGTGCTCAGGGGGTATTCAGTTATGGTGTAGACAGTCGTGCACAACGTCATCGTAGAGGTAAGTTTGGAGACCATGACTTTCGCGATGACTTTTCATCAAATTTGGGGAGTGATGACTACCAGCATTTTGGAAATGCAGATCCCACTGTGGATCTTTATTCTCATGGCATTGTAAACGCACTTCCTGTCAGCAGTTTCCACTCCAGCACTTTTGGTGGTTACACTTGTGCTGATTGGAGGGTTGAAGATGGTGGATCATATGGTAACACTTTCTATTATTACTGA 1932 0.4741 MIMACSSDYGFDLNQNQDLSAQPTYVPPHLRNKPFPVSAAHNPTSSFGDHSFPGQPRFSGYNRSSAYPVSSNQQVWNGSARGRGRGRGYGRGRCGFFSQGVLPRESFHSDPYVDRVTSDVSDKFSGLQLTDCDADGTLNFDAYEDVPVEATGSDIPPPVTAFDEMDLAEALSTNIKRCSYVKPTPIQRHALPIALAGRDLMACAQTGSGKTAAFCFPIISGLLKNCYPAPSGSVAHPSALILCPTRELACQINDEAKKFAYQTGLKLAVAYGGAPMGRQFRNLELGVDILVATPGRLADMIERGRVSLERIKYLALDEADRMLDMGFVPQIRQIVMQMGMPAPGARQTMLFSATFPNEIQRLASEFLSNYIFLCVGRVGSSTELIAQRVERVEDINKGNRLFDLLQTHKANGTHGKQVLTLVFVETKKGADALESWLLRKGLSAVAIHGDKVQMEREQALRSFKSGATPILVATDVASRGLDIPQVAHVINFDLPKDIDHYVHRIGRTGRAGKSGVATAFFSEKNLPLAKPLVELMQEANQEVPVWLNQCAQGVFSYGVDSRAQRHRRGKFGDHDFRDDFSSNLGSDDYQHFGNADPTVDLYSHGIVNALPVSSFHSSTFGGYTCADWRVEDGGSYGNTFYYY* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00319 643 SMART ultradead3 179 388 IPR014001 -
Pte3g00319 643 SMART helicmild6 431 512 IPR001650 -
Pte3g00319 643 FunFam ATP-dependent RNA helicase RhlB 376 554 - -
Pte3g00319 643 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 137 551 - -
Pte3g00319 643 Pfam DEAD/DEAH box helicase 184 361 IPR011545 GO:0003676|GO:0005524
Pte3g00319 643 Gene3D - 376 554 IPR027417 -
Pte3g00319 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 527 IPR027417 -
Pte3g00319 643 Gene3D - 126 375 IPR027417 -
Pte3g00319 643 Pfam Helicase conserved C-terminal domain 416 512 IPR001650 -
Pte3g00319 643 CDD DEADc_DDX3_DDX4 162 379 IPR044763 GO:0003724|GO:0005524
Pte3g00319 643 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 551 IPR001650 -
Pte3g00319 643 FunFam Probable ATP-dependent RNA helicase DDX4 128 375 - -
Pte3g00319 643 CDD SF2_C_DEAD 385 521 - -
Pte3g00319 643 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 160 188 IPR014014 GO:0003724
Pte3g00319 643 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 373 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00319 Pte-Chr3 2598543 2603617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00319 142 545 Eukaryotic Initiation Factors Gene Family AT3G19760 32.840 1.31e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00319 K11594 - qsa:O6P43_023075 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00319 3 2598543 2603617 Pte3g00319 3 2598543 2603617 RCT