Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00313 ATGGTGCAGACAAACAAGTACAGAGGAGTCAGACAACGCCATTGGGGTTCTTGGGTATCTGAAATTCGACACCCACTTCTGAAGAGGAGGGTTTGGCTAGGAACATTTGAAACAGCTGAAGAAGCAGCCAAGGCCTATGACCAAGCAGCCATTTTGATGAGCGGCAGAAATGCCAAGACCAATTTCCCAATAACTCAAACACCATCTGGCGAACCAAAACCAATAGAGGATTCCCCATCATCGCCAGAAGGTCTATCGGAGATACTGCACGCAAAACTTAGGAAATGCAGTAAGGCACCATCCCCATCCATGACTTGCTTGAGGCTTGACGCAGAGAATTCTCATATTGGGGTGTGGCAAAAGCGTGCAGGTCATCGTTCTGATTCCAATTGGGTCATGACTGTCAAGCTTGGAAAGAATGCAAGCCATGTCGATTGCCGTCAAGACAGTTCCTTGGCGTCGGATGAGCATGATCAGACTGTATTTGCAATGGATCAGAACAAGGAAGTGAGAGCAGAAGTGAATGAGGAGGAGAGGATAGCCCTTCAAATGATAGAAGAACTTCTTAACGGGGACAGCCCTAGCCCTTCATTTGATATTGAAGACAAAGCGCGAGACAGCTTTTACATTTAA 633 0.4676 MVQTNKYRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDQAAILMSGRNAKTNFPITQTPSGEPKPIEDSPSSPEGLSEILHAKLRKCSKAPSPSMTCLRLDAENSHIGVWQKRAGHRSDSNWVMTVKLGKNASHVDCRQDSSLASDEHDQTVFAMDQNKEVRAEVNEEERIALQMIEELLNGDSPSPSFDIEDKARDSFYI* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00313 210 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pte3g00313 210 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pte3g00313 210 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pte3g00313 210 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pte3g00313 210 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Pte3g00313 210 MobiDBLite consensus disorder prediction 62 84 - -
Pte3g00313 210 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pte3g00313 210 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pte3g00313 210 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Pte3g00313 210 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Pte3g00313 210 Coils Coil 167 187 - -
Pte3g00313 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00313 Pte-Chr3 2563782 2565003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00313 1 190 AP2-EREBP Transcription Factor Family AT1G15360 61.084 3.74e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte3g00313 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00313 - - pvy:116110590 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00313 3 2563782 2565003 Pte3g01124 3 9609028 9611491 RCT
Pte3g00313 3 2563782 2565003 Pte3g00313 3 2563782 2565003 RCT