Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00307 ATGGAAGGCAGTGATGATCTCCACCGTCACTACCACCATCAGCAGCACCACCGTCCGAATTTCCCATTCCAACTGCTTGAAAAGAGAGAAGATCAAGAAGCTGCTTCTTGTTCAACCTCATCATCTCCATACCCTTCCCTAGCCATATCGTCAGCTGAACCAAGTTGTTCCAATCGGTCCGGGTCCAGCCAAGCACTTGTACCTATACCCTCTCAACCGTCCTCCAATAAGAAACCAATTCCCAAGAGAACATCCACCAAAGATCGACACACTAAGGTCGACGGCCGTGGTCGTCGTATTAGAATGCCCGCGCTCTGTGCAGCTCGAGTCTTCCAGCTCACAAGAGAGCTCGGTCACAAGTCCGATGGTGAAACCATCGAATGGTTACTCCAACAAGCTGAGCCGGCTGTCATTGCTGCCACCGGCACAGGAACCATTCCAGCAAACTTCACTTCTCTTAACATATCTTTGAGAAATTCCGGGTCTAGCATGTCCGTTCCGTCACAGTTAAGATCATCGTACTTCAATCCAAATTTCTCAATTCAACAGCGAAGAAGTTTGTTCCCAGGAATCGGTCTTTCAACAAATGAAAACACAAGCTCTTCTACCCTTTTGAATTTTCAGACAGGCAATCTAAGCGCAGCCATGTTCCAAGCGAAGCAGGAGCTGCGTGAAGCCGGAGGCGGGGGTGGGGGACCATCATCGTCCACGTTAGAATTTTCAGAAGCCGATGAGGAAGGTTTGGGAAGAAAACGGAGACCATCTGAGCAGGACCTGTCATCTAGTCAACATCAAATGGGGAGTTATTTGTCGCAGTCAAGTGCAGGAGCTATTCCGGCGAGTCATAGTCAGATTCCGGCTAATATATGGATGGTTGCGAATTCAAATAACCAAGTTATGAGTGGGGACCCTATATGGACGTTTCCTACGGTGAACAACAGTGCTGCTTTATACAGAGGCTCTGTGTCCAGTGGATTACATTTCATGAATTTTCCGACGCCAATGGCACTATTGCCTGGTCAACAATTAGGGTCACCAAGCATGGGGAGTGGCAGTGGCGGCGGCAATAGTGCAAACTTAAGTGAAGGTCATTTGAGCATTCTCGCCGGACTAAACCCATACAGACCCGTTATCACTGTATCAGACTCTCAAGAAAGTGGGTCTCAATCACATCACGGTGGCGGCGACGATCGACAAAATACAACCAGTCATCACCACTCATAA 1224 0.4853 MEGSDDLHRHYHHQQHHRPNFPFQLLEKREDQEAASCSTSSSPYPSLAISSAEPSCSNRSGSSQALVPIPSQPSSNKKPIPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRNSGSSMSVPSQLRSSYFNPNFSIQQRRSLFPGIGLSTNENTSSSTLLNFQTGNLSAAMFQAKQELREAGGGGGGPSSSTLEFSEADEEGLGRKRRPSEQDLSSSQHQMGSYLSQSSAGAIPASHSQIPANIWMVANSNNQVMSGDPIWTFPTVNNSAALYRGSVSSGLHFMNFPTPMALLPGQQLGSPSMGSGSGGGNSANLSEGHLSILAGLNPYRPVITVSDSQESGSQSHHGGGDDRQNTTSHHHS* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00307 407 ProSiteProfiles TCP domain profile. 86 140 IPR017887 -
Pte3g00307 407 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 31 394 IPR005333 GO:0003700
Pte3g00307 407 MobiDBLite consensus disorder prediction 224 275 - -
Pte3g00307 407 MobiDBLite consensus disorder prediction 381 407 - -
Pte3g00307 407 MobiDBLite consensus disorder prediction 381 396 - -
Pte3g00307 407 MobiDBLite consensus disorder prediction 259 275 - -
Pte3g00307 407 MobiDBLite consensus disorder prediction 243 258 - -
Pte3g00307 407 MobiDBLite consensus disorder prediction 1 98 - -
Pte3g00307 407 MobiDBLite consensus disorder prediction 35 80 - -
Pte3g00307 407 Pfam TCP family transcription factor 84 224 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00307 Pte-Chr3 2520431 2521654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00307 77 398 TCP Transcription Factor Family AT3G47620 45.146 1.88e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pte3g00307 TCP 3.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00307 - - qsa:O6P43_022832 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00307 3 2520431 2521654 Pte3g00307 3 2520431 2521654 RCT