Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00302 ATGTCAAGCCGGAGGTCCCGATCAAGACAATCAAGTTCTGCCTCAAGGACCATTACAGATGATCAGATCAATGAACTTGTTTCCAAGCTGCAGCAGCTTCTACCGGAGATTCGAGACAGACGTTCCGACAAGGTTTCAGCAGCAAGGGTGTTGCAGGAGACCTGCAACTACATCAGAAGCTTACATAGGGAAGTGGACGATCTAAGTGAGCGGCTGTCTGAGCTGCTTGCAACAACCGATACGGCCCAAGCTGCAGTAATTAGAAACCTACTTATGCAATAG 282 0.4858 MSSRRSRSRQSSSASRTITDDQINELVSKLQQLLPEIRDRRSDKVSAARVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAAVIRNLLMQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00302 93 Pfam Helix-loop-helix DNA-binding domain 21 62 IPR011598 GO:0046983
Pte3g00302 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 61 IPR011598 GO:0046983
Pte3g00302 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 79 IPR036638 GO:0046983
Pte3g00302 93 CDD bHLH_AtPRE_like 18 78 - -
Pte3g00302 93 Gene3D - 20 89 IPR036638 GO:0046983
Pte3g00302 93 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pte3g00302 93 FunFam Transcription factor ILI6 7 88 - -
Pte3g00302 93 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00302 Pte-Chr3 2492027 2492997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00302 18 94 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 82.051 1.77e-39 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g00302 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00302 - - gmx:100527636 149.058