Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00287 ATGGCGGGTGGAAGGGTCTGTAGCGGTAGTCGTGGCAACGCTTCCAATTCCAACGTTTTACTCCACAATCTAACTGGAACTCGTACTTCTGAGCCTCGCGATGCATTTTTCCTTTCTGGGTCATCTTCTTCTTTTCCCGGTTCCAGATCCATGGTGAGCTTTGAAAATGTTCAAGTGAAAAAAGGTTGTACTGGTTCTTTCCTCCACCCGTTTGACCAAGATGATAACCGAGATGAAGAATTCGATGATTTCTTTCATCAACCTGAAAAGAAGAGGCGTCTTACTGTGGATCAAGTGCAGTTTCTTGAGAAAAGCTTTAAGTTTGAGAACAAGCTTGAGCCGGAAAGGAAAGTTCAGCTGGCGAGAGAACTCAGTTTGCAGCCCCGGCAAGTTGCAATTTGGTTTCAGAACCGCCGGGCACGATGGAAGACAAAGCAGCTGGAGAAGGACTATGATACCCTCCAAGGTAGCTACAACAATCTTAAGGCTGACTATGAGAACCTTCTCAAGGAGAAGGATGCATTAAATGCTCAGGTTCTGGAACTGAAAGAAAAGTTGCTCAAAGGAGAGAAACAACGGAATAACCTAGTGCATATTGATGACAAGAAATTACAAGAACCAACACCGAGTAATTTAGTTGATACAGCTTCCGAAGGTGAAGGATCCAAAGTATCATTTATGGCTTACAAACAGGAAGATATCAGTTCAGCCAAAAGTGATATAGTTGACTCATATAGTCCACATAACACAGACGGAGTTCACTCCTCGTTCATTGAGACTGGGGATGCATCTTATGTTTTCGAACCTGACCAATCAGATCTTTCTCAAGGAGAAGAAGATAACTTCAGTAAAGATCTGTTACCAGTGCCTCCTTATGTCTTCCCCAAGCTTGAAGATGCTCATTATTCCGACCTGTCAGCAAGTTCATGTAATCTTGGCTTCCAGATCCAAGAGCACGGCATCTGGTCATGGTCTTACTAA 981 0.4363 MAGGRVCSGSRGNASNSNVLLHNLTGTRTSEPRDAFFLSGSSSSFPGSRSMVSFENVQVKKGCTGSFLHPFDQDDNRDEEFDDFFHQPEKKRRLTVDQVQFLEKSFKFENKLEPERKVQLARELSLQPRQVAIWFQNRRARWKTKQLEKDYDTLQGSYNNLKADYENLLKEKDALNAQVLELKEKLLKGEKQRNNLVHIDDKKLQEPTPSNLVDTASEGEGSKVSFMAYKQEDISSAKSDIVDSYSPHNTDGVHSSFIETGDASYVFEPDQSDLSQGEEDNFSKDLLPVPPYVFPKLEDAHYSDLSASSCNLGFQIQEHGIWSWSY* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00287 326 SUPERFAMILY Homeodomain-like 72 147 IPR009057 -
Pte3g00287 326 CDD homeodomain 90 146 IPR001356 GO:0003677
Pte3g00287 326 Gene3D - 85 152 - -
Pte3g00287 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 230 IPR045224 GO:0003700
Pte3g00287 326 Coils Coil 144 192 - -
Pte3g00287 326 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Pte3g00287 326 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Pte3g00287 326 FunFam homeobox-leucine zipper protein ATHB-6-like 93 139 - -
Pte3g00287 326 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Pte3g00287 326 SMART HOX_1 88 149 IPR001356 GO:0003677
Pte3g00287 326 Pfam Homeodomain 90 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00287 Pte-Chr3 2408283 2410222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00287 88 257 Homeobox Transcription Factor Family AT3G01470 46.821 4.44e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte3g00287 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00287 - - pvy:116134733 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00287 3 2408283 2410222 Pte2g02332 2 42953549 42955904 RCT
Pte3g00287 3 2408283 2410222 Pte3g00287 3 2408283 2410222 RCT