Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00271 ATGTCCGGCATACGCAACGCTGCTGACTCTACTGTCTCCGGCAATTGTGCCGGTGCCGGAGAGTTCATGCTGTTTGGGGTTAGAGTAGTGGTTGACTCAATGAGAAAAAGCGTCAGTATGAATAATCTTTCTCAGTACGAGCATCCACAAGATGCGACTAACAACAGCGATCGCAAGGAAGATACGGTTGCTGCCGGCTACGCATCCGCCGATGAGGCTGTCCATCGTAATTCCGGCAGGAATCGGGAGCGCAAACGAGGGGTTCCATGGTCAGAGGATGAGCATAAGCTTTTCTTGCTTGGCTTACAGAAAGTTGGAAAAGGAGATTGGAGAGGAATCTCGCGGAACTTTGTCAAGACAAGGACGCCTACCCAGGTGGCAAGTCATGCTCAGAAGTACTTTCTCCGCCGCAACAACCTCAACCGCCGTCGCCGCCGATCTAGCCTGTTTGATATCACAACTGATTCGGTGACTCCTATGCCATTGGAGAAAGAACAGGAGCAATATCAAGCCAATCTTCCAACTAAGTTGGTGAGACCAGTTCCAATTTCCCTAGATGCTAACGCTTCAACGTTACCATGTGATGATAACACGAATTTGAATTCAGCAATTGATCCTGCATCACTGTCACTTCAATTATCTCTGCCATCTGAGCCAAGAGCTACCCCTTCAAGGCATTCAGCATTTCAGGCAATTCCCTGCTTCAAAAATGGAGATAACATCATTTCCGTTGCATGA 738 0.4837 MSGIRNAADSTVSGNCAGAGEFMLFGVRVVVDSMRKSVSMNNLSQYEHPQDATNNSDRKEDTVAAGYASADEAVHRNSGRNRERKRGVPWSEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNLNRRRRRSSLFDITTDSVTPMPLEKEQEQYQANLPTKLVRPVPISLDANASTLPCDDNTNLNSAIDPASLSLQLSLPSEPRATPSRHSAFQAIPCFKNGDNIISVA* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00271 245 MobiDBLite consensus disorder prediction 41 88 - -
Pte3g00271 245 FunFam transcription factor MYB1R1 88 139 - -
Pte3g00271 245 CDD SANT 89 134 IPR001005 -
Pte3g00271 245 Pfam Myb-like DNA-binding domain 89 134 IPR001005 -
Pte3g00271 245 NCBIfam myb-like DNA-binding domain, SHAQKYF class 85 136 IPR006447 GO:0003677
Pte3g00271 245 ProSiteProfiles Myb-like domain profile. 82 134 IPR001005 -
Pte3g00271 245 Gene3D - 88 140 - -
Pte3g00271 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 138 IPR017930 -
Pte3g00271 245 SUPERFAMILY Homeodomain-like 84 139 IPR009057 -
Pte3g00271 245 PANTHER TRANSCRIPTION FACTOR KUA1 17 187 - -
Pte3g00271 245 SMART sant 86 136 IPR001005 -
Pte3g00271 245 ProSiteProfiles SANT domain profile. 85 138 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00271 Pte-Chr3 2287711 2290030 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte3g00271 Myb_DNA-binding 1.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00271 - - qsa:O6P43_030925 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00271 3 2287711 2290030 Pte3g00271 3 2287711 2290030 RCT