Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00254 ATGTTAATGTTAACTCATCAGTGTCCGATTGAAAAAGGAAACAAAGCAAAAAAGAATTCAAAGAATTACTCTCTGCACGCCTTCTTTCTTTCTTTCTTTCTTCTTGCTTATTCTTCAATGACTGAAAAATGCAATCGCTCCGAACGCCGGATTCTCACATTTCCGGCTGTGCATCCCTGTGAAGATATATCTCCGACGACCTTTCTCAGCTCTTTGATTTGTATCTCACATAATATATGCAATTACCAGTCAAAGTTCTTTGCCACACAGAGAAGAAACGTAAGAGAAACCATACGACAGATTCGCATTCTCCTGTTCTTCCTTGAGGAAATTCGTGAACATGGTCTAGAACTTTCAGACTCCGTTGTGACTTGCTTCTTTGAGCTTCACGTTAGCTTCCAAAAGATACAATATTTAATGGAGGATTGTACTAGGGATGGAGCTAAACTCTGGATGCTAATGAACTGTCAGTTCGTTGCAGCACAGTTCAGACACATGATTCGTGCTGTCGCCACTGCTCTTGATGTATTACCGATGGATAGGATTGAGGTTTGTGGTGAAGTGAAAGAGTTGGTTGATTTGGTAGCCAAGCAAGCGCGCAAGGTGGAGTTGGAGCTCGAACGAAACGATGAGGTGGCCATGAAACACGTTCATGCAGTACTATGCCAATTTGAGAAGGGAATCGAACCAGATTACATCGCCCTGAAGCAGATTCTGGACTACCTCGAAATCAAGAGCTGGAATGATTGTAATAAAGAGATTAAGTTCTTGGAAGAAGAGATAAGATTTCAGTTCTCGGATCGTAACGAAAGAGAGGTTCCGTTGCTGAGCAGTTTGGTGGCGTTCTTGAGCTATTGCAGGGCCGTGGTTTTTGAAACACTGGATTTTCGAAACATAGCTGAGCAACCAGAAGTTAGGTGCAATCCTGAAACGCTTAGTTGCTTGAATCCAGAGGACTTCCGTTGCCCAATTTCACTAGAGCTTATGACAGACCCGGTTACTGTTTCAACTGGCCAGACATATGATCGATCTTCAATCCAGAAGTGGCTCAAATCTGGAAACTTGATCTGTCCCAAAACAGGGGAGAAGCTGACAAGCAAAGAGTTGGTTCCCAATATAGCAGTCAAAAAGCTATTCCAACGGTTCTGTGCAGATAATGGCATCTCACTTGCCAAATCAGGAAGTCAGAGTCGTGACATAACAAGGACTGTCACTCCTAGTAGTCAGGCATCGGCAGAAGCAATTCAACTTGTTTCCAATTTTCTTGCCCGCAGGCTTGTCTTCGGTTCAAGTGAACAGAAAAACAAAGCTGCTTATGAAGTCCGTTTGCTTGCAAAGTCTAACATATTCAACAGGTCTTGTTTAGCTGAAGCAGGAACTGTACTGCCTCTGATTAACCTTATTACGTCTTCAACAGATACTTGCACACAGGAGAATGCAATTGGATCCTTGCTGAAGCTCTCGAAGCACACCTGTGGCAGAAGAGAGATCATGGATAATTGGGGCTTAACGCCCATCCTTATGGTTCTTAAGAAGGGTTTGAGTTTAGAAGCCAGGCAAATGGCTGCAGCAACTGTGTTCTACCTATCTTCAGTAAAGGATTACAGAAAGTTGATAGGAGAAAACCCTGACGTAATTCCTGCTTTGATAGAGCTAATCAAGGAAGGAACAACTTGCGGCAAAAAGAATGCAGTGGTTGCTATTTTTGGGCTCCTCTTTTCTCCTCAAAATCACAAAAGAGTACTTGCGGCTGGTACTGTTCCATTGCTAGTTTCCATGTTAATTTCTTCAGACACGGCTGAGATTACAGTGGATTCTTTAGCAGTTCTGGCAACCTTAGCAGAAAGTGGAGAGGGAACATCTGCTATCCTACAGGCCTCGGCTTTACCTTTGATAACATCAATTTTGCAAGGCTCAGAATCACGTGCTGGGAAAGAGTACTGTGTCTCCATTTTGCTTTCTGTGTGTGTCATTGGCGGTGTTGAAGTTTTGGCCATTTTGGCCAAGGACCCTTCATTGACGTCTTCTCTATATTCAGTTTTGGAAGACGGTACTGCTCATGCGAAGAAGAAAGCACGTTCGCTCATCAAAATTTTACTTGAATTCAACGAGAAAAAGACAGTCTCCCTTGACGGTCCCGAATGA 2145 0.4326 MLMLTHQCPIEKGNKAKKNSKNYSLHAFFLSFFLLAYSSMTEKCNRSERRILTFPAVHPCEDISPTTFLSSLICISHNICNYQSKFFATQRRNVRETIRQIRILLFFLEEIREHGLELSDSVVTCFFELHVSFQKIQYLMEDCTRDGAKLWMLMNCQFVAAQFRHMIRAVATALDVLPMDRIEVCGEVKELVDLVAKQARKVELELERNDEVAMKHVHAVLCQFEKGIEPDYIALKQILDYLEIKSWNDCNKEIKFLEEEIRFQFSDRNEREVPLLSSLVAFLSYCRAVVFETLDFRNIAEQPEVRCNPETLSCLNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKSGNLICPKTGEKLTSKELVPNIAVKKLFQRFCADNGISLAKSGSQSRDITRTVTPSSQASAEAIQLVSNFLARRLVFGSSEQKNKAAYEVRLLAKSNIFNRSCLAEAGTVLPLINLITSSTDTCTQENAIGSLLKLSKHTCGRREIMDNWGLTPILMVLKKGLSLEARQMAAATVFYLSSVKDYRKLIGENPDVIPALIELIKEGTTCGKKNAVVAIFGLLFSPQNHKRVLAAGTVPLLVSMLISSDTAEITVDSLAVLATLAESGEGTSAILQASALPLITSILQGSESRAGKEYCVSILLSVCVIGGVEVLAILAKDPSLTSSLYSVLEDGTAHAKKKARSLIKILLEFNEKKTVSLDGPE* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00254 714 Gene3D - 390 709 IPR011989 -
Pte3g00254 714 SUPERFAMILY ARM repeat 420 702 IPR016024 -
Pte3g00254 714 FunFam RING-type E3 ubiquitin transferase 316 388 - -
Pte3g00254 714 Pfam U-box domain 317 386 IPR003613 GO:0004842|GO:0016567
Pte3g00254 714 ProSiteProfiles U-box domain profile. 315 389 IPR003613 GO:0004842|GO:0016567
Pte3g00254 714 SMART Ubox_2 319 382 IPR003613 GO:0004842|GO:0016567
Pte3g00254 714 SUPERFAMILY RING/U-box 317 389 - -
Pte3g00254 714 FunFam RING-type E3 ubiquitin transferase 396 710 - -
Pte3g00254 714 CDD RING-Ubox_PUB 317 369 IPR045210 -
Pte3g00254 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 389 IPR013083 -
Pte3g00254 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 585 628 IPR000225 GO:0005515
Pte3g00254 714 PANTHER U BOX DOMAIN-CONTAINING 91 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00254 Pte-Chr3 2169722 2172679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00254 47 707 U-box Gene Family AT1G60190 42.411 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00254 - - qsa:O6P43_022729 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00254 3 2169722 2172679 Pte3g00254 3 2169722 2172679 RCT