Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00239 ATGCTGCCTGGTCGAATAGGAAAGCAGTGTAGAGAGAGATGGCATAACCATCTGAGGCCTGACATTAAGAAAGATACATGGAGTGAAGGAGAGGATAACATATTGATTCAAGCGCACTCGGAGATAGGAAATAAGTGGGCAGAGATTGCCAAAAGATTACCAGGAAGAACTGAAAACTCCATCAAGAACCACTGGAATGCCACCAAGAGAAGACAATACTCAAAAAGAAAATCCCTTTCGAAGTACCCACAAGGGTCTGTTCTCCAAGAATATATCAAGAGTTTGAACCTGGAAACCAACCCACCAATGGACTGTTGGAAAAGTTCTTCAGCCACAGCAAACAGATTGGCAACTCAACCTCAGCACGGAAATCAACTTTGCACTACTGATAGGCTGGTAACGTGCTATGAGTTTGATGATGTACGGGGAGTTTGTTTTGACAAGAACATGTTTCAAGAGGCTTGCAGCATTGATTCTCTTCTTGATATTATGCCATGTGCTCCAGTTATGGATGAGAAAGATAATCAACAAAGTATGACAGCTGATCATGCTCCTGCAATTGACACTGATTATAACAAAAGCAAAAACATATACCCATCAGCAAACAATGATGTTAAGGAGCTGGACTTGGTGGAGATGATATCTGAAGTCATTCTTTATGTGTAA 666 0.4129 MLPGRIGKQCRERWHNHLRPDIKKDTWSEGEDNILIQAHSEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKSLSKYPQGSVLQEYIKSLNLETNPPMDCWKSSSATANRLATQPQHGNQLCTTDRLVTCYEFDDVRGVCFDKNMFQEACSIDSLLDIMPCAPVMDEKDNQQSMTADHAPAIDTDYNKSKNIYPSANNDVKELDLVEMISEVILYV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00239 221 SUPERFAMILY Homeodomain-like 1 76 IPR009057 -
Pte3g00239 221 PANTHER MYB PROTEIN-RELATED 2 123 - -
Pte3g00239 221 Pfam Myb-like DNA-binding domain 25 66 IPR001005 -
Pte3g00239 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Pte3g00239 221 CDD SANT 26 69 IPR001005 -
Pte3g00239 221 FunFam Transcription factor MYB119 25 89 - -
Pte3g00239 221 Gene3D - 1 23 - -
Pte3g00239 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 18 IPR017930 -
Pte3g00239 221 SMART sant 23 71 IPR001005 -
Pte3g00239 221 Gene3D - 25 89 - -
Pte3g00239 221 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00239 Pte-Chr3 2046125 2046912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00239 1 165 MYB Transcription Factor Family AT4G18770 57.803 3.47e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte3g00239 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00239 K09422 - gmx:100816653 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00239 3 2046125 2046912 Pte3g00239 3 2046125 2046912 RCT