Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00226 ATGGCCTCATCTAGTTCATACAACCCTCCTTGCGCCGCCTGCAAATTCCTACGGAGGAAATGCGTGACAGGATGCACCTTTGCACCTTACTTCCCCCCTGAAGATCCCCAGAAGTTCATCAACGTGCATAAGATATTTGGTGCAAGCAATGTGACTAAGCTTCTCAATGAGCTTCTCCCTCATCAGAGAGAGGATGCAGTGAATACACTTGCATACGAAGCAGAGGCCCGAGTGAGAGACCCAGTTTATGGATGTGTAAGTGCCATCACTTACCTCCAGAGACAGGTCCAAAAACTGCAGAAAGAGCTTGACGCTGCTAATGCTGATCTTATCCGCTACGCATGCAATGACATTCAACCTGCCACTGGGTTACCTTCTCCACCTGCACTGCATTCATCATGGCCAAGGCCGGCTGATCAGTTCGCTGGAAGAATAGACAATGAAGGAGCCCTAGGTGGTTACTACTCTGGGCAATCACCCTCCGGTACGATTCAGCTTCCTTATCCTCCTCAATGGAGAGACTCTTCTTCTGGGGGCATCAATCAAGGAGGAGGACACATGTAA 564 0.4965 MASSSSYNPPCAACKFLRRKCVTGCTFAPYFPPEDPQKFINVHKIFGASNVTKLLNELLPHQREDAVNTLAYEAEARVRDPVYGCVSAITYLQRQVQKLQKELDAANADLIRYACNDIQPATGLPSPPALHSSWPRPADQFAGRIDNEGALGGYYSGQSPSGTIQLPYPPQWRDSSSGGINQGGGHM* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00226 187 MobiDBLite consensus disorder prediction 162 187 - -
Pte3g00226 187 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Pte3g00226 187 Coils Coil 89 116 - -
Pte3g00226 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 126 - -
Pte3g00226 187 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00226 Pte-Chr3 1951138 1951701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00226 1 113 AS2 family AT5G63090 86.842 8.38e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte3g00226 LOB 9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00226 - - tcc:18604002 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00226 3 1951138 1951701 Pte3g00226 3 1951138 1951701 RCT