Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00223 ATGACTACCAGGTTCAAGAAGAATAGGAAGAAGCGTGGGCATGTGAGCGCTGGACATGGCCGTATCGGCAAACACCGTAAGCATCCAGGAGGTCGCGGTAACGCGGGTGGTATGCACCACCACAGAATCCTCTTCGATAAATACCATCCAGGGTATTTTGGCAAAGTGGGTATGCGTTACTTCCATAAGCTGCGCAACAAGTTCCATTGCCCCATCGTCAACATCGATCAGATCTGGTCGTTGGTGCCCCAAGATGTGAAGGAGAAGGCGTCAAAATCCAAAGACAGCGTACCAATGATTGACGTGACCCAGTTTGGGTACTTCAAGGTATTGGGTAAAGGTGTGTTGCCTGAGAACCAACCTATTGTGGTAAAGGCAAAGCTGATCTCAAAGACTGCTGAGAAGAAGATCAAGGAGAATGGTGGAGCGGTCGTTCTCACTGCCTGA 447 0.4966 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPIVNIDQIWSLVPQDVKEKASKSKDSVPMIDVTQFGYFKVLGKGVLPENQPIVVKAKLISKTAEKKIKENGGAVVLTA* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00223 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
Pte3g00223 148 FunFam 60S ribosomal protein L27a 58 148 - -
Pte3g00223 148 Gene3D - 58 148 - -
Pte3g00223 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
Pte3g00223 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
Pte3g00223 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 145 IPR021131 -
Pte3g00223 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Pte3g00223 148 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00223 Pte-Chr3 1934969 1936017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00223 1 149 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 87.919 2.29e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00223 K02900 - cit:102609777 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00223 3 1934969 1936017 Pte2g02412 2 43600470 43602137 RCT
Pte3g00223 3 1934969 1936017 Pte1g01971 1 40984315 40985003 RCT
Pte3g00223 3 1934969 1936017 Pte3g00223 3 1934969 1936017 RCT