Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00193 ATGGGTACTGCAAGTAAACCTGTTTTCAAGGCTTTTACGATGTCCGATTCATGTCTATTATCTATGCCGTCACTTGCCAATTCTAAAACCATTTATCCATGTCACTCTGTTCCTTTCAAAATCAGGCTCCATCTCTCATGTTGCGCAACCGACCCTTCACTTTTTTTACCATCTTTGTCTCTAAGGAGGAAGACCCATTTTTCATCGATTACCACCTTTGTTGCCCAGACCTCTGACTGGGCTGCAAAAGAGTTGCAACAGCTAGAAGAAGACGAGGAAGCTGAGCAAAAAGAACCCACATTGGAAAACGGTAACTTGGGCGAGACTGAAGCTAGTTTCCCAGATGACGAAGCAGAGGATGAAGATGGCATTTTTGGAGCTGAGCAAAAAGAACCCACATTGGAAAACGGTAACTTGGGCGAGACTGAAGCTAGTTTCCCAGATGACGAAGCAGAGGATGAAGATGGCATTTTTGGAGGTGTAGGAGGCGAAGATAGGGGTTTAGAAGAGAGAGAAGATGACAACAATGTTGAACCACCTGAAGATGCCAAGATTTTTGTTGGGAATTTGCCTTACAATGTTGACTGTGATGCGTTGGCTGGTCTTTTTGACCAGGCTGGGACAGTTGAAGTTGCAGAGGTCATATACAATAGGGAAACTGAACGTAGCCGTGGGTTTGGGTTTGTGACCATGAGTACAGTTGCTGAAGCTGAAAAGGCTGTGGAAAAATTCCATCAGTATGACATGGGTGGAAGGCTGTTGACTGTCAACAAGGCTAGTGCTCGGGGAGAAAGGGTAGAACGTCCTCCTCGTGCAGTTGGATCATCCTTCACGATGTATATTGGTAACTTGCCATGGAATGTTGATGATGCTCGCTTAGAGCAGATATTCAGTGAGCATGGGAAGGTAATAAATGCCCGGGTGATTTATGACAGAGAAACCAACCGCTCACGTGGTTTTGCTTTTGTTACAATGGCTACTGAAACTGAGATGAATGATGCGGTTGGAGCTCTTGATGGCCAGAGTTTGGACGGGAGAACAATCAGGGTTAGTGTTTCCGAGAACAGACCAAGACGTTAA 1080 0.4537 MGTASKPVFKAFTMSDSCLLSMPSLANSKTIYPCHSVPFKIRLHLSCCATDPSLFLPSLSLRRKTHFSSITTFVAQTSDWAAKELQQLEEDEEAEQKEPTLENGNLGETEASFPDDEAEDEDGIFGAEQKEPTLENGNLGETEASFPDDEAEDEDGIFGGVGGEDRGLEEREDDNNVEPPEDAKIFVGNLPYNVDCDALAGLFDQAGTVEVAEVIYNRETERSRGFGFVTMSTVAEAEKAVEKFHQYDMGGRLLTVNKASARGERVERPPRAVGSSFTMYIGNLPWNVDDARLEQIFSEHGKVINARVIYDRETNRSRGFAFVTMATETEMNDAVGALDGQSLDGRTIRVSVSENRPRR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00193 359 Gene3D - 76 267 IPR012677 -
Pte3g00193 359 FunFam 31 kDa ribonucleoprotein, chloroplastic 267 359 - -
Pte3g00193 359 PANTHER OS02G0815200 PROTEIN 61 356 - -
Pte3g00193 359 SUPERFAMILY RNA-binding domain, RBD 176 273 IPR035979 GO:0003676
Pte3g00193 359 SMART rrm1_1 278 351 IPR000504 GO:0003723
Pte3g00193 359 SMART rrm1_1 184 257 IPR000504 GO:0003723
Pte3g00193 359 SUPERFAMILY RNA-binding domain, RBD 270 358 IPR035979 GO:0003676
Pte3g00193 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 349 IPR000504 GO:0003723
Pte3g00193 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 254 IPR000504 GO:0003723
Pte3g00193 359 MobiDBLite consensus disorder prediction 87 180 - -
Pte3g00193 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 261 IPR000504 GO:0003723
Pte3g00193 359 Gene3D - 268 359 IPR012677 -
Pte3g00193 359 MobiDBLite consensus disorder prediction 164 180 - -
Pte3g00193 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 355 IPR000504 GO:0003723
Pte3g00193 359 CDD RRM2_NsCP33_like 278 350 - -
Pte3g00193 359 Coils Coil 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00193 Pte-Chr3 1772251 1774962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00193 185 359 Eukaryotic Initiation Factors Gene Family AT3G16380 33.696 3.13e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00193 - - qsa:O6P43_030799 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00193 3 1772251 1774962 Pte2g02422 2 43686641 43689239 RCT
Pte3g00193 3 1772251 1774962 Pte1g01990 1 41099349 41102610 RCT
Pte3g00193 3 1772251 1774962 Pte3g00193 3 1772251 1774962 RCT