Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00185 ATGGCAGGCCCTTCATTCTGCCTCTTTTTCGTTGCCATCCTCTTCTCTCTCCATATCCGATCTCTTATTTCCTCCTCACCAGTACAGGACCCAGAATTGGTCGTATCAGAGGTACACAGACAAATCAATGCGACAAGGAGGAACTTGGGGTACCTGTCTTGTGGAACTGGCAACCCCATTGATGATTGCTGGAGGTGTGACCCCAATTGGGAGCAGAACAGGCAAAGGCTAGCTGACTGTGCAATTGGGTTTGGCAAGAATGCCATTGGTGGGAGAGATGGTAAAATTTACGTAGTCACAGATTCTGGAAATGATGACCCTGTAAACCCTACACCAGGGACACTACGACATGCAGTGGTTCAAGATGAGCCATTGTGGATCATATTTGAGAGAGACATGGTGATTCAGCTGAAGGAAGAATTGATTATGAACTCGTTCAAGACCATTGATGGTAGAGGAGCCAGTGTGCACATTGCTGGGGGTCCATGCATTACCATACAGTACGTGACTAACATCATAGTTCATGGGGTTAACATCCATGACTGCAAGCAAGGAGGGAATGCTATGGTGAGGGACTCCCCACGGCACTATGGGTGGAGAACTATATCGGATGGTGATGGAGTGTCCCTCTTTGGTGCAAGTCATGTTTGGGTGGACCACTGCTCATTGTCTAATTGTGCTGATGGCTTGATTGATGCCATTCATGGTTCCACTGCTATTACAATTTCAAACAATTATATGACACACCATGACAAAGTCATGCTCTTGGGTCATAGCGATACCTATACTCAAGACAAGGCTATGCAGGTCACCATAGCTTTCAATCACTTTGGAGAAGGGCTTGTTCAGAGGATGCCAAGATGCAGGCATGGTTACTTCCATGTGGTCAACAATGATTATACCCACTGGGAGATGTATGCCATAGGAGGGAGTGCTAATCCAACTATCAATAGCCAAGGGAATAGATTTGTTGCCCCAAACGACATGAACAGCAAAGAGGTGACTAAACATGAGGATGCATCAGAAAGTGAATGGAAGAATTGGAATTGGAGATCAGAAGGAGACATGTTGGTAAACGGTGCGTTTTTTACAGCGTCAGGTGCAGCAGCTTCGTCTATCTATGCAAAGGCATCGAGTTTAAGTGCCAGACCCTCTTCACTTGTCGGTCCGATAACGACAGGTGCTGGTGCGCTTAACTGTAGGAAAGGGTCCCGTTGCTGA 1221 0.4668 MAGPSFCLFFVAILFSLHIRSLISSSPVQDPELVVSEVHRQINATRRNLGYLSCGTGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGNDDPVNPTPGTLRHAVVQDEPLWIIFERDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIVHGVNIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSLFGASHVWVDHCSLSNCADGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKAMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDMNSKEVTKHEDASESEWKNWNWRSEGDMLVNGAFFTASGAAASSIYAKASSLSARPSSLVGPITTGAGALNCRKGSRC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00185 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Pte3g00185 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Pte3g00185 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Pte3g00185 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Pte3g00185 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Pte3g00185 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Pte3g00185 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Pte3g00185 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Pte3g00185 406 SUPERFAMILY Pectin lyase-like 43 401 IPR011050 -
Pte3g00185 406 SMART amb_all 132 329 IPR002022 -
Pte3g00185 406 FunFam Pectate lyase 57 399 - -
Pte3g00185 406 Pfam Pectate lyase 142 323 IPR002022 -
Pte3g00185 406 Gene3D - 57 399 IPR012334 -
Pte3g00185 406 PANTHER PECTATE LYASE 18-RELATED 29 404 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00185 Pte-Chr3 1737126 1739135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00185 9 407 Polysaccharide Lyase AT4G24780 83.831 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00185 K01728 - tcc:18605010 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00185 3 1737126 1739135 Pte3g00185 3 1737126 1739135 RCT
Pte3g00185 3 1737126 1739135 Pte2g02433 2 43745891 43747709 RCT
Pte3g00185 3 1737126 1739135 Pte1g01992 1 41109169 41111069 RCT
Pte1g01992 1 41109169 41111069 Pte3g00185 3 1737126 1739135 RCT