Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00183 ATGACGTCGAATAAGGGGTTTCTGACCAATGAGCAGAGAGAAATACTGAAAGTAGCAAGCCAAAATGCTGAGAGTTTGTCTTCGTCGCCAAAATCACCATCTCCCTTGCTCTCTGAGCATCACCTCAGAGCTAATGCTGGGGGGGCCGGCGGCGGCAAGACACAGTCTCACGCTAGTGGGAATGCAGTGAAGCATGTTCGCAGGTCGCACTCTGGCAAGTTTGTGCGCGTCAAGAAAGATGGCGGTGGTGGTAAAGGAACTTGGGGAAAACTACTTGACACTGATGGTGACTCACACCTTGATCGGAATGATCCCAACTATGATAGTGGCGAGGAGCCTTATCAGCTTGTTGGGTCAACTGTGACAGATCCATTAGATAAATATAAGAAGGCTATCATATCCATTATTGAGGAATACTTCAGCACTGGAGACGTGGATTTGGCAGCATCTGACCTCAAAGAACTTGGGTCCAGTGAATACCATTCTTACTTCATCAAGCGGCTCATCTCCATGTCCATGGACAGGCATGATAAAGAGAAAGAAATGGCTTCAGTTCTGCTTTCAGCCTTGTATGCTGATGTGATAAGTCCTGTTCAGATAAGGGATGGATTTCTAATACTTCTTGAATCAGCTGATGATCTCGCAGTTGACATATTGGATGCAGTTGACATCCTCGCTCTATTTCTAGCACGTGCCGTTGTTGATGACATCCTTCCTCCAGCTTTCCTCTCGAGGGCTCAGAAGGCTCTCCCAGAATCTTCTAAAGGAGTCCAGGTTATCCAGACTGCTGAGAAAAGTTACCTCTCTGCACCTCACCATGCAGAGCTGGTGGAGAGGAAGTGGGGTGGTAGCACTCACATTACTGTTGAGGAAGTAAAGAAAAAGATTGCTGATTTGTTAAGGGAATATGTCGACAGTGGTGATACTTCTGAAGCCTATAGGTGTATGAGAGAGTTAGGGGTTTCGTTCTTCCACCATGAGGTTGTCAAGCGGGCATTGGTACTTGCTATGGAGATTCGAACAGCAGAACCACTTATCCTGAAGCTTTTAAAAGAAGCTGGCGAGGAAGGACTTATTAGTTCAAGTCAGATGGTAAAAGGGTTTTCTCGATTTGCAGAGAGCCTCGATGATCTTGCCCTTGATATTCCATCTGCGAAGAACTCTTTTCATTCATTGGTCCCCAGAGCAATATCCGAAGGATGGCTTGATGCCTCCTTTATGAAATCTTCTGGAGAAGATGGGGATATAGCAGTTGAAGATGAAAAGCTAAGAAGGTACAAAAAGGAGGCTGTTACTATAATTCATGAATACTTTCTCTCGGATGACATTCCTGAACTTATCCGAAGCCTTGAAGATCTAGGGGCGCCCGAGTATAACCCTATATTTTTGAAGAAGCTAATAACTCTTGCTATGGACCGAAAAAACAGAGAAAAAGAGATGGCATCCGTCCTACTATCTTCTCTTCATATAGAGATCTTCTCAACAGAGGATATAGCTAATGGCTTCGTCTTGCTTCTGGAAAGTGCAGAAGATACAGCGTTGGATATTTTGGATGCTTCGAATGAGCTTGCTCTTTTCTTAGCCAGGGCTGTGATTGATGATGTATTGGCCCCTCTGAATTTGGAAGAGATAGGCAGCAAGTTGCCACCGAAATGCAGTGGCACTGAGACTGTGCGTATGGCTCGTTCTCTAATTGGTGCACGCCACGCTGGTGAAAGGCTCCTCAGATGTTGGGGAGGTGGGACTGGATGGGCTGTGGAAGATGCCAAGGACAAAATCATGATATTATTGGAGGAGTATGAAAGTGGAGGTGTTGTGAGCGAAGCGTGTCAGTGCATCCGTGATCTTTCCATGCCTTTCTTCAATCATGAGGTGGTGAAGAAAGCTTTGGTTATGGCAATGGAGAAGAAGAATGATAGGTTACTGGATCTTCTGCAGGAATGCTTTAACGAGGGACTCATAACTATTAATCAGATGACCAAAGGATTCACCAGGATCAAGGATGGTCTTGATGATCTTGCTCTGGACATCCCTAATGCAAAAGAGAAATTTAGTTTATATGTAGAGTTTGCCCAGAAAAAGGGTTGGCTGCTTCCGTCATTCGATTCATCTGCTGTAGGCGCTGTCTAG 2130 0.4531 MTSNKGFLTNEQREILKVASQNAESLSSSPKSPSPLLSEHHLRANAGGAGGGKTQSHASGNAVKHVRRSHSGKFVRVKKDGGGGKGTWGKLLDTDGDSHLDRNDPNYDSGEEPYQLVGSTVTDPLDKYKKAIISIIEEYFSTGDVDLAASDLKELGSSEYHSYFIKRLISMSMDRHDKEKEMASVLLSALYADVISPVQIRDGFLILLESADDLAVDILDAVDILALFLARAVVDDILPPAFLSRAQKALPESSKGVQVIQTAEKSYLSAPHHAELVERKWGGSTHITVEEVKKKIADLLREYVDSGDTSEAYRCMRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAGEEGLISSSQMVKGFSRFAESLDDLALDIPSAKNSFHSLVPRAISEGWLDASFMKSSGEDGDIAVEDEKLRRYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSSLHIEIFSTEDIANGFVLLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSKLPPKCSGTETVRMARSLIGARHAGERLLRCWGGGTGWAVEDAKDKIMILLEEYESGGVVSEACQCIRDLSMPFFNHEVVKKALVMAMEKKNDRLLDLLQECFNEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFSLYVEFAQKKGWLLPSFDSSAVGAV* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00183 709 ProSiteProfiles MI domain profile. 588 707 IPR003891 -
Pte3g00183 709 SMART ma3_7 426 537 IPR003891 -
Pte3g00183 709 SMART ma3_7 292 403 IPR003891 -
Pte3g00183 709 SMART ma3_7 589 698 IPR003891 -
Pte3g00183 709 SMART ma3_7 128 239 IPR003891 -
Pte3g00183 709 ProSiteProfiles MI domain profile. 127 248 IPR003891 -
Pte3g00183 709 Gene3D - 576 704 - -
Pte3g00183 709 Gene3D - 278 410 - -
Pte3g00183 709 ProSiteProfiles MI domain profile. 425 546 IPR003891 -
Pte3g00183 709 MobiDBLite consensus disorder prediction 1 115 - -
Pte3g00183 709 SUPERFAMILY ARM repeat 585 703 IPR016024 -
Pte3g00183 709 FunFam programmed cell death protein 4 119 270 - -
Pte3g00183 709 Gene3D - 120 268 - -
Pte3g00183 709 Gene3D - 418 568 - -
Pte3g00183 709 FunFam programmed cell death protein 4 415 569 - -
Pte3g00183 709 Pfam MA3 domain 129 239 IPR003891 -
Pte3g00183 709 Pfam MA3 domain 590 697 IPR003891 -
Pte3g00183 709 Pfam MA3 domain 427 536 IPR003891 -
Pte3g00183 709 Pfam MA3 domain 292 403 IPR003891 -
Pte3g00183 709 ProSiteProfiles MI domain profile. 291 412 IPR003891 -
Pte3g00183 709 PANTHER PROGRAMMED CELL DEATH 4 5 702 IPR039778 GO:0045892
Pte3g00183 709 MobiDBLite consensus disorder prediction 92 108 - -
Pte3g00183 709 SUPERFAMILY ARM repeat 424 582 IPR016024 -
Pte3g00183 709 SUPERFAMILY ARM repeat 288 409 IPR016024 -
Pte3g00183 709 SUPERFAMILY ARM repeat 126 285 IPR016024 -
Pte3g00183 709 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00183 Pte-Chr3 1724489 1728293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00183 592 688 Eukaryotic Initiation Factors Gene Family AT5G57870 30.000 7.16e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00183 - - gmx:100809081 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00183 3 1724489 1728293 Pte3g00183 3 1724489 1728293 RCT