Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00178 ATGATCGAGCAGTTTTACTATGCTGAGGAGATAAAGAACATAGTGAGCAGTGAGGGATCAATCAAGGTGGAGAGGCATGAGAGAGTGGACCAGTGGAGGAAGACGATGAGCAGAGCTGGATTTCAGGCTGCTCCAATCAAGATGATAGCTCAGGTCAAACAATGGCTCAACAAGAACAATTCTTTTGAAGGTTACAACATTGTGGAAGAGAAAGGCTGTTTGGTACTGGGGTGGAAATCAAAGCCAACCATTGCAGGTTCATGCTGGAAACGCTAG 276 0.4565 MIEQFYYAEEIKNIVSSEGSIKVERHERVDQWRKTMSRAGFQAAPIKMIAQVKQWLNKNNSFEGYNIVEEKGCLVLGWKSKPTIAGSCWKR* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00178 91 ProSiteProfiles GRAS family profile. 1 90 IPR005202 -
Pte3g00178 91 Pfam GRAS domain family 1 90 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00178 Pte-Chr3 1660715 1660990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00178 1 90 GRAS Transcription Factor Family AT1G14920 41.304 9.51e-20 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte3g00178 GRAS 3e-23 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00178 - - vvi:100263271 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00178 3 1660715 1660990 Pte2g02442 2 43778415 43780239 RCT
Pte3g00178 3 1660715 1660990 Pte3g00178 3 1660715 1660990 RCT