Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00171 ATGGACGACTCTGTCCAACGCAAGATGGAACAATTTTATGAAGGTTCTGATGGACCTCCTCTTCGTGTTCTTCCTATTGGAGGCCTCGGTGAAATTGGAATGAACTGCATGCTTGTTGGGAATTATGATCGTTATATTCTTATTGATGCTGGTGTCATGTTTCCAGGTTACGAAGAACTTGGGGTCCAAAAAATAATACCTGACACCACATTTATCAAAAGATGGAAACACAAAATTGAAGCAGTTGTTATAACACACGGCCACGAAGATCATATTGGCGCGTTGCCTTGGGTAATCCCAGCGTTGGATACTCATACTCCTATATTTGCAACTTCATTTACAATGGAGCTTATTAAGAAACGACTGAAGGAGCATGGTATTTTTGTTCCATCAAGACTAAAGGTATTCAGAACAAAAAGGAAGTTCACGGCAGGCCCATTTGATATTGAGCCCATCACGGTGACCCATTCTATTCCCGATTGTTGTGGGCTTGTTCTTCGCTGCTCTGATGGTACAATTCTCCATACTGGGGATTGGAAAGTAAGATTTTCGATAATTTTTCAATTTTTTTTGTTGTATGTTTTTCTTCTCACACAAGAAGTTGAAATCCACCAGATTGATGAAACACCATTGGACGGAAAAGTTTTTGATCGTGAAACTTTAGAGCAATTATCTAAAGAAGGAATAACATTGATGATGAGTGACTCGACAAATGTTCAGTCCCCGGGAAGGACACTTAGTGAAGCTACTGTGGCTGATGCTCTATTAAGGCATATTTCAAATGCAAAGGGAAGGGTTATTACAACCCAATTTGCATCAAACATACACCGTCTTGGAAGTGTGAAGGCAGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCCTTAAGGACCTACCTAGAAGCAGCTTGGAAGGATGGAAAGGCACCAATAGACCCATCCACATTGGTAAAAGTTGAAGACATTGATGCATATGCCCCGCAGGACCTGATAATTGTTACTACAGGTTCTCAAGCAGAACCACGTGCTGCCCTAAATCTTGCATCTTATGGAAGTAGTCATGCTTTTAAATTGACGAAGGAAGATGTAATTCTCTATTCTGCAAAGATGATCCCTGGTAATGAAACTCGAGTGATGAAAATGATGAACCGAATTTCAGAGATTGGATCATCAATAGTAATGGGGAGAAATGAAGGTTTGCACACATCTGGTCATGGATATCGCGGGGAACTGGAAGAAGTACTCAAAATTGTAAAGCCACAACATTTCCTTCCCATACATGGTGAACTTCTATTCCTGAAGGAGCATGAATTATTGGGGAAGTCAACTGGCATCCGACATACTACTGTTATAAAGAATGGTGAAATGCTTGGTGTTTCTCATCTAAGAAACAGAAGAGTTCTGTCAAATGGTTTCATCGCTCTGGGGAAAGAAAATTTACAGTTGAAGTATAGTGATGGTGATAAAGCATTTGGCACTTCAACTGAACTCTGTATTGATGAAAGATTAAAAATTGCATTAGATGGCATCATAGTGGTCAGCATGGAAATATGTCGACCTGAAAATATAGATGGTTTGGTGGAAAATACTTTAAAAGGAAAGATACGAATCACTACAAGATGCTTATGGCTTGACAAGGGGAAGCTTCTGGACGCACTTCATAAAGCTGCTCATGCTGCACTCTCAAGCTGTCCCGTGAACTGTCCTTTGGCCCACATGGAAAGAACTGTGGCAGAGGTATTAAGGAAGATGGTGAGAAAGTACAGTGGTAAGAGGCCTGAAGTCATTGCTGTTGCTGTTGAAAATCCAGCAGCTGTTCTGGCCAATGAAGTGAATATGAGGTTAGCTGGCAAATCACCTGTCGCTCTTGGGATGCAGTCACAGAGAAAACCAGTGGATGGACATCCCAAAACAAATATGGTCATAGACAAAAGAATGGAGGACCGCCAAAGCACTCAAACATTAGGCGATGATGACATACATTTTGAGGATCTGCTGGAGGAAGAAGACACAACTAGAGCAGCACCAGAGGTTTCTAATTCAGGTGAATTAGAAGAGTTATGGAAAGAATATACCTCGTCCTTACCTGTTGAGAAGACAATAAAGGCAAACAACGGTTATGTTGCGAAGAGGGAGGAAATGGCAGAGGTGAAGAAAGACAGTTCTCAAACTGAGGCTGAGAGTTCTCAATCCAAGGCTTCCGCGACAGTGAAAAGGAATAAATGGAAGCCTGAGGAAGTTAAGAAGCTGATTAATATGCGCGGGGAATTGAATGATAGGTTTCAAGTAGTGAAGGGGAGAATGGCTCTTTGGGAAGAGATATCTGGAAACCTGTCGTTAGATGGGATCAACAGAAGTCCTGGGCAATGTAAATCTCGATGGACTTCTTTACTTCAACAGTATCAGGAGATAAAAGATGGGAAGAGAATTAAGAAAAATTGGCCCTATTATGAGGACATTGACAGAGCTTTGTCTTCCTCGGATAACATGGCAACCAAATGA 2511 0.4134 MDDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPGYEELGVQKIIPDTTFIKRWKHKIEAVVITHGHEDHIGALPWVIPALDTHTPIFATSFTMELIKKRLKEHGIFVPSRLKVFRTKRKFTAGPFDIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKVRFSIIFQFFLLYVFLLTQEVEIHQIDETPLDGKVFDRETLEQLSKEGITLMMSDSTNVQSPGRTLSEATVADALLRHISNAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPIDPSTLVKVEDIDAYAPQDLIIVTTGSQAEPRAALNLASYGSSHAFKLTKEDVILYSAKMIPGNETRVMKMMNRISEIGSSIVMGRNEGLHTSGHGYRGELEEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFIALGKENLQLKYSDGDKAFGTSTELCIDERLKIALDGIIVVSMEICRPENIDGLVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVAEVLRKMVRKYSGKRPEVIAVAVENPAAVLANEVNMRLAGKSPVALGMQSQRKPVDGHPKTNMVIDKRMEDRQSTQTLGDDDIHFEDLLEEEDTTRAAPEVSNSGELEELWKEYTSSLPVEKTIKANNGYVAKREEMAEVKKDSSQTEAESSQSKASATVKRNKWKPEEVKKLINMRGELNDRFQVVKGRMALWEEISGNLSLDGINRSPGQCKSRWTSLLQQYQEIKDGKRIKKNWPYYEDIDRALSSSDNMATK* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00171 836 Gene3D - 745 806 - -
Pte3g00171 836 SUPERFAMILY Metallo-hydrolase/oxidoreductase 21 460 IPR036866 -
Pte3g00171 836 MobiDBLite consensus disorder prediction 717 743 - -
Pte3g00171 836 Gene3D - 6 188 IPR036866 -
Pte3g00171 836 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 402 444 IPR011108 -
Pte3g00171 836 SMART Lactamase_B_5a 33 214 IPR001279 -
Pte3g00171 836 Pfam Beta-lactamase superfamily domain 44 180 IPR001279 -
Pte3g00171 836 CDD RNaseJ_MBL-fold 24 460 - -
Pte3g00171 836 SUPERFAMILY Homeodomain-like 740 805 IPR009057 -
Pte3g00171 836 CDD GT1 743 808 - -
Pte3g00171 836 Gene3D - 247 405 IPR042173 -
Pte3g00171 836 ProSiteProfiles Myb-like domain profile. 737 801 IPR001005 -
Pte3g00171 836 PANTHER RIBONUCLEASE J 1 181 - -
Pte3g00171 836 Pfam Myb/SANT-like DNA-binding domain 742 825 IPR044822 -
Pte3g00171 836 SMART sant 741 803 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00171 Pte-Chr3 1608732 1616379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00171 744 829 Trihelix Transcription Factor Family AT2G38250 32.955 2.70e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pte3g00171 Lactamase_B_2 1.5e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00171 - - qsa:O6P43_022564 1276.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00171 3 1608732 1616379 Pte3g00171 3 1608732 1616379 RCT