Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00154 ATGGACTGGAATTTTAAACCGTCTTGGGATTTGACTGAATTGGAGCAAGCGACTTTGCCCAACTTAGGAACAGTAAATGCTTCTGCCGGGTATGGAGTTACCCGAACTGAAAATGACTTCTCTATTGATTTGAAGCTTGGTCAGGTGGGTCATTCCAGTAATGAGTCTGTACAGAAGTGGAAAGAAACTGGGGTTTCGAAAATGGCATCTTCACCTTCAGGATCGTCCAAGAGAGCTCGAGCACTCAACAACAGAACTCAGTCGGTGACCTGTCTTGTTGACGGGTGTAATTCAAATCTTAGTAATTGTAGAGATTACCATAGACGCCATAAGGTCTGTGAAGCTCACTCCAAAACTCCCCAGGTTACTGTGGGTGGCCTGAAACAAAGGTTCTGTCAACAGTGTAGCAGGTTCCATTCGCTGGAGGAGTTTGATGATGGGAGACGAAGCTGCCGGAAACGTTTAGATGGACACAACCGAAGGCGAAGAAAACCACAGCCAGAACCCATCACGAGGGCTCCCACATTTTTGTCCACTTACCAAGGTAGCCAGTTTTTGCCATTAGCAACCTCGCAGGTCTATCCATCCACGTCTGTGGTGAATCCTTCTTGGACTGGAGTTGTGACTACTGAGGCAGATGCGAGGCTGCAAAACCAGTATCATCAAATGCACTTGGTCGAAAAACAAAACCTGTTCATGAGATCTTCAGGCACCAGCTACAAAGAAAACAAGCAGTATACATTCCTGCAGGAGGAGAACCCTAGTAATCCATGTAGCATACCACTTCAAGTTATGGTAACCACCGGCGCAGGTGGTTCGAATCTGCATGGCCCAGGGATGTATAATATGGGATCTGATGAATCACAAGGCAATGAGCCCGCTCGAGCGTTTTCTTTCGCCTGGAATTAA 909 0.4686 MDWNFKPSWDLTELEQATLPNLGTVNASAGYGVTRTENDFSIDLKLGQVGHSSNESVQKWKETGVSKMASSPSGSSKRARALNNRTQSVTCLVDGCNSNLSNCRDYHRRHKVCEAHSKTPQVTVGGLKQRFCQQCSRFHSLEEFDDGRRSCRKRLDGHNRRRRKPQPEPITRAPTFLSTYQGSQFLPLATSQVYPSTSVVNPSWTGVVTTEADARLQNQYHQMHLVEKQNLFMRSSGTSYKENKQYTFLQEENPSNPCSIPLQVMVTTGAGGSNLHGPGMYNMGSDESQGNEPARAFSFAWN* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00154 302 MobiDBLite consensus disorder prediction 151 173 - -
Pte3g00154 302 Pfam SBP domain 91 164 IPR004333 GO:0003677
Pte3g00154 302 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 50 289 IPR044817 GO:0003677
Pte3g00154 302 ProSiteProfiles Zinc finger SBP-type profile. 88 165 IPR004333 GO:0003677
Pte3g00154 302 FunFam Squamosa promoter-binding-like protein 14 82 152 - -
Pte3g00154 302 SUPERFAMILY SBT domain 89 170 IPR036893 GO:0003677|GO:0005634
Pte3g00154 302 Gene3D - 82 152 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00154 Pte-Chr3 1514676 1517871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00154 1 260 SBP-box Gene Family AT5G50670 45.455 1.49e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte3g00154 SBP 9.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00154 - - qsa:O6P43_023553 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00154 3 1514676 1517871 Pte3g00154 3 1514676 1517871 RCT