Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00132 ATGAACAGATTTAATTTTGTCAAAGATGGAGTGACCAGATTACCTCCAGGTTTTCGTTTTCAGCCAACAGATGAGGAGCTTGTTTTTCAATATTTGAAGTGTAAAGTCTTCTCCTGCCCTTTACCTGCTTCAATCATTCCTGAGATCAATGTCTGCAAATACGACCCCTGGGATATTCCAGGTCAACCTGAGCAAGACAGGTATTTTTTCAGCTGCAAGGAAGCAAAATACCGAAATGGAAACCGTATGAACAGATCAACCAACTCAGGATATTGGAAGGCTACTGGCGCAGAAAAAAGAATTTCATCTTCAAGAAGATCGAATGACAGCATTGTGGGGATAAGGAAAACGCTTGTTTTCTACGAAGGCAAGTCTCCACATGGGACAAGAACTGATTGGGTCATGCATGAATATCGCCTTCTCATCAATGGAACCACTAATCCGGAAAACGAAGTAGGAGAATGGGTTTTATGTCGCCTATTCTTGAAGAAACGAAGTGGAGATTTTGCTGACCAGGACGCTCCTATTCCCAATAGTAATAGGGTGGTAGCGAGCGTGGAGGTGGCTCAACCAAGATACTTCAATTTCATGATGGTCCACGATAATGGTGCAGGCCCTGTTCTTTCATCTACATCGTCTTCCTCCAGTTTCAATGGTACGACAGAGGTCACTTCGAATGTATCAGAGTTTGAAGAAACTAGTGGCTACACATACTGA 717 0.4296 MNRFNFVKDGVTRLPPGFRFQPTDEELVFQYLKCKVFSCPLPASIIPEINVCKYDPWDIPGQPEQDRYFFSCKEAKYRNGNRMNRSTNSGYWKATGAEKRISSSRRSNDSIVGIRKTLVFYEGKSPHGTRTDWVMHEYRLLINGTTNPENEVGEWVLCRLFLKKRSGDFADQDAPIPNSNRVVASVEVAQPRYFNFMMVHDNGAGPVLSSTSSSSSFNGTTEVTSNVSEFEETSGYTY* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00132 238 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Pte3g00132 238 ProSiteProfiles NAC domain profile. 14 163 IPR003441 GO:0003677|GO:0006355
Pte3g00132 238 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 209 - -
Pte3g00132 238 MobiDBLite consensus disorder prediction 208 238 - -
Pte3g00132 238 SUPERFAMILY NAC domain 11 163 IPR036093 GO:0003677|GO:0006355
Pte3g00132 238 Gene3D NAC domain 23 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00132 Pte-Chr3 1347768 1348995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00132 1 168 NAC Transcription Factor Family AT5G13180 64.286 5.68e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte3g00132 NAM 9.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00132 - - qsa:O6P43_023531 310.457