Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte3g00131 | ATGGGTTGCGTTCTGGGAACGCCTGCAAAGGAAGATGGGGCCGGCAGTGCGTCCTCTCGAGTTCAGAAACGTCGGCTTGGTGGGAGAAAACAATCTGGTACTGACACTGACGACTCCCGTACGGTTCGGAAGGAGGTGAAGCAAACAGAGTCTCAGGTAACCGCCAACTTAACGGTTAAAGTTCCGGAACCGGAGCTGCGGACACCTAGGTGGGATCCATGCGCGACTAACGAGCAAGGTTGGCCGTCATGGTTGCTCGCAGTAGCCGGTGAAGCCATACAAGGTTGGACGCCCCGTCGAGCTAGCACATTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTATATAAGGCTAGAGATCTTGTAACTGAGAAGACAGTGGCTTTGAAGAAAGTCCGGTTTGATAATTTGGAACCTGAAAGTGTGAAATTCATGGCCAGGGAGATCCTTGTGCTGAGAAAGCTTGATCACCCCAATGTGATTAAACTTGAAGGGTTAGTCACTTCAAGAATGTCTTGTAGCCTTTACTTGGTATTCGAATATATGGAACACGATCTTGCTGGTCTTGCCGCTGGTCAAGGGGTCAAGTTCACTGAACCCCAGGTTAAGTGCTACATGAAGCAATTACTTTCTGGGCTTGAGCATTGCCACACCAGTGGTGTACTGCACCGTGATATCAAGTGTTCAAATTTGCTAATCGACAATGAAGGAGTCCTTAAAATAGCAGATTTTGGTCTAGCTACTTTCTATGAACCAGGACAAAAGAAGCCCATGACAAGTCGAGTTGTCACCCTCTGGTATCGTCCCCCTGAACTTCTTCTTGGAGCCACTTTCTATGGCCCTGGTATTGACCTTTGGAGTGCTGGCTGCATTTTAGCAGAACTTCTTGCTGGCAAGTCAATCCTGCCAGGACGCACAGAGGTTGAACAACTGCACAAGATATTCAAGTTATGTGGCTCTCCCTCTGAGGAATATTGGAAGAAACATAGATTGCCAAATGCGACCCTTTTCAAGCCTCAGCAGCCATATAAACGTTGCATTACTGAAACCTTCAAGGACTTCCCCCCTTCTTCACTACCTCTAATTGAAGCTCTTCTTGCAATAGATCCTACTGACCGTGGCACTGCTACTACTGCTCTAAATAGTGTATTTTTGACCACCGAGCCTCATGCTTGCGAGCCTTCATGTTTACCAAAGTATCCTCCAACCAAGGAGTTAGATATAAAACTGAGAGATGAAGAAGCAAGAAGGCAGAAGAGTCTTAGCAAAAAAGCTATTGCTGTGGATGGGACCAGAAGGGTTAGGCATCGTGAGCATGGTCGGGCAATTCCAGCTCCAGAAGCCAATGCAGAAATCCAATCAAATTTAGATAGATGGAGATTAGTTAACCATGCTGATGCCAAAAGCAAGAGTGAGAAATTTCCACCTCCACACCAGGACGGGGCAGTGGGATATCCAGTAGAGTCATTGGAGAAAGTTCCTGTGTCGTTTGGGGTTTCTGATGCTTCATTCAGCTCTGCAATATTCAGCACTAAGTCACCTGAATCTGCTAAAAGTGTTGGGGCTGCTGGAGGACCTTCCAGACGGAGTAAACCAAATAAAGCAATTCCAAAGATGACTTCTTGGAAATTGATGCGCTCATTTAAGCCATCATCAGTAGGTCTATCGATGAATTTGATGTTTAGGGGTAAATAG | 1704 | 0.4654 | MGCVLGTPAKEDGAGSASSRVQKRRLGGRKQSGTDTDDSRTVRKEVKQTESQVTANLTVKVPEPELRTPRWDPCATNEQGWPSWLLAVAGEAIQGWTPRRASTFEKLAKIGQGTYSNVYKARDLVTEKTVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHTSGVLHRDIKCSNLLIDNEGVLKIADFGLATFYEPGQKKPMTSRVVTLWYRPPELLLGATFYGPGIDLWSAGCILAELLAGKSILPGRTEVEQLHKIFKLCGSPSEEYWKKHRLPNATLFKPQQPYKRCITETFKDFPPSSLPLIEALLAIDPTDRGTATTALNSVFLTTEPHACEPSCLPKYPPTKELDIKLRDEEARRQKSLSKKAIAVDGTRRVRHREHGRAIPAPEANAEIQSNLDRWRLVNHADAKSKSEKFPPPHQDGAVGYPVESLEKVPVSFGVSDASFSSAIFSTKSPESAKSVGAAGGPSRRSKPNKAIPKMTSWKLMRSFKPSSVGLSMNLMFRGK* | 568 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte3g00131 | 567 | FunFam | probable serine/threonine-protein kinase At1g54610 | 187 | 428 | - | - | |
| Pte3g00131 | 567 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Pte3g00131 | 567 | SUPERFAMILY | Protein kinase-like (PK-like) | 98 | 393 | IPR011009 | - | |
| Pte3g00131 | 567 | ProSitePatterns | Protein kinases ATP-binding region signature. | 110 | 133 | IPR017441 | GO:0005524 | |
| Pte3g00131 | 567 | Pfam | Protein kinase domain | 104 | 387 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte3g00131 | 567 | CDD | STKc_CDK9_like | 104 | 387 | - | - | |
| Pte3g00131 | 567 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 224 | 236 | IPR008271 | GO:0004672|GO:0006468 | |
| Pte3g00131 | 567 | MobiDBLite | consensus disorder prediction | 518 | 539 | - | - | |
| Pte3g00131 | 567 | MobiDBLite | consensus disorder prediction | 28 | 47 | - | - | |
| Pte3g00131 | 567 | FunFam | probable serine/threonine-protein kinase At1g54610 | 91 | 186 | - | - | |
| Pte3g00131 | 567 | Gene3D | Transferase(Phosphotransferase) domain 1 | 187 | 428 | - | - | |
| Pte3g00131 | 567 | PANTHER | CELL DIVISION PROTEIN KINASE | 102 | 392 | - | - | |
| Pte3g00131 | 567 | SMART | serkin_6 | 104 | 388 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte3g00131 | 567 | ProSiteProfiles | Protein kinase domain profile. | 104 | 388 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte3g00131 | 567 | Gene3D | Phosphorylase Kinase; domain 1 | 91 | 186 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte3g00131 | Pte-Chr3 | 1337669 | 1341503 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte3g00131 | 96 | 427 | Core Cell Cycle Gene Families | AT5G10270 | 50.287 | 4.73e-113 | 344 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CMGC_CDK-CRK7-CDK9 | Pte3g00131 | Pkinase | 3.2e-67 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte3g00131 | K08819 | - | qsa:O6P43_023529 | 863.988 |