Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00125 ATGGCAGCCTTTTCACATCCGTATCATCCTTTTCTCAATGACTCTGCATTTCTCCTCAACAGTGCTTCCAACTTAAACCCGCCTGCCTTAACTCCGCCACATGAAAGACATCATTTGCTGACCCCAAGTCATTTCCCTCATTTTGACCCTTATTCTGCAATTCAACATCCCCAGCCTTCATACGTTGTTCATAATCACGAACCTAATTTCCTCAAGGATTCAGTCTCAGGCACAAAAGTTACTTTCAGTCATGATAGCGAGTCCTCTATAACCAAAAGACATAGTAATAATGAGGATTCAGCGATCCTTGATAAGCTGCAAACTGGTGATGATGATCCCGATTCTCAAAAGATGACTTCCATGGAGAAGAGAAGGAAAAGCAGAAGGAGTTCTTCACTAGTCCCTGCAAAACCTAAGGTAGCTACACAAGGAAAAAGCAAGAGGCACAAGAAAAGCGATAAAGTCATGCAGGGAAAGGAGCAAACCAAAGCAGAGAATGAAGTTATCAATGAGCCTCCAAAAGGTTACATCCATGTAAGAGCAAGAAGGGGTCAGGCAACAGATAGCCACAGCTTGGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAGAGAATGCGGATATTGCAGAGACTTGTTCCAGGCTGCGACAAGGTTACTGGGAAGGCCCTCATGTTGGACGAGATAATCAATTATGTGCAGTCCCTACAAAATCAAGTAGAGTTCCTTTCAATGAGACTTGCATCTTTGAATCCTACCTTGTATGACTTCACAATGGACCTAGACACATTCATGGTCGGGCAAGAGAAATTGGACAACACAGCAACGTGCAGACCCAACCTGCACCTCACAGCTTTTGTGAATGCAACCCCAACCACAACAATTGCCACGCCAACTGCAACTAGTACCATGGCAAACACATTTACATTCACCTCAGGTGGGAACGATTATGGCCATGCTCTTTTCAACAACTCAGACCCGGTTTCAGTTCAAGGACAGAGGGAAAATGTCTTAGGTCAGGAGAGTGCTAATCTATACTGGGACATGGAAGAGCAGAGACAAAAGTATCTTAACCCACGTTATCAAGCAACTACTTATGCAATGTCCACCAATGGGGTTTACTGA 1122 0.4412 MAAFSHPYHPFLNDSAFLLNSASNLNPPALTPPHERHHLLTPSHFPHFDPYSAIQHPQPSYVVHNHEPNFLKDSVSGTKVTFSHDSESSITKRHSNNEDSAILDKLQTGDDDPDSQKMTSMEKRRKSRRSSSLVPAKPKVATQGKSKRHKKSDKVMQGKEQTKAENEVINEPPKGYIHVRARRGQATDSHSLAERVRREKISERMRILQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMRLASLNPTLYDFTMDLDTFMVGQEKLDNTATCRPNLHLTAFVNATPTTTIATPTATSTMANTFTFTSGGNDYGHALFNNSDPVSVQGQRENVLGQESANLYWDMEEQRQKYLNPRYQATTYAMSTNGVY* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00125 373 MobiDBLite consensus disorder prediction 82 175 - -
Pte3g00125 373 MobiDBLite consensus disorder prediction 86 129 - -
Pte3g00125 373 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
Pte3g00125 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 252 IPR036638 GO:0046983
Pte3g00125 373 Gene3D - 182 255 IPR036638 GO:0046983
Pte3g00125 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 235 IPR011598 GO:0046983
Pte3g00125 373 MobiDBLite consensus disorder prediction 153 167 - -
Pte3g00125 373 FunFam Basic helix-loop-helix transcription factor 182 255 - -
Pte3g00125 373 SMART finulus 191 241 IPR011598 GO:0046983
Pte3g00125 373 CDD bHLH_AtBPE_like 175 260 - -
Pte3g00125 373 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 76 295 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00125 Pte-Chr3 1227940 1230098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00125 37 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 45.620 1.67e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g00125 HLH 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00125 - - gmx:100806696 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00125 3 1227940 1230098 Pte3g00125 3 1227940 1230098 RCT