Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00118 ATGCTTAATGATAGACTGTTACACTTCGTCAATGTTGACATCCATGATGTTAAGGAAGCTAGAAAGCGCTTTGAAAAGTCATCACAAGCATATGATCAGGCTCGTGAAAAGTTTCTATCACTGAGGAAGAGCACTAAGATGGATGTTGCTGCTGCCTTAGAAGAGGAATTGTACAATGCAAGGTCCTCATTTGAAGAATCTCGCTTCAATTTGGTCAGTGCTCTTTCAAATGTAGAGGCGAAAAAGAGATTTGAGTTTCTTGAGGCTGTTAGTGGAATTATGGATGCGCATCTAAGATACTTCCAACAAGGATATGAAATGCTGCATCAAATGGAACCTTTTATTCATGAGGTTTTGAATTATGCTCAACGTTCTAGAGAAAATTCCAACAACGAGCAAATTTTTCTCGTTGAAAAAATGCAAGAGTACAAAAAACAAATTGATATTGAAAGTAAGCACTCACTTAGTTGTCCTTACGGTGCTCCAAATGGAGATTGTGTGCAACCTTTTGCTAGGAAATCAAATCAAGTGATAGAAGCAGTCAAGGAATCAGCTACAAATGGGAAGGTTCAAATAATAAGACAAGGATATCTTTCAAAACGATCGTCCAATTTGAGAGCTGACTGGAAAAGACGATATTTTGTTGTAGATAGCCTGGGAATGCTGTACTACTATCGTAAACAGTGGAACATATCGGCTAGTGCAACTCAACCACCTGGTCAAAAGAGTAGCACTACCGAAAACGCTTCTGGGCTGCTAAGCCGGTTGCTCTCATCTCATTACCATGGCGGTATCCATGACGAAAAATCTGTAGCACGTCACACTGTGAATCTGCTTACGTCAACAATTAAGCCTGATGCAGAGCAGTCGGATTTAAGATTCTGCTTTAGGATCATATCACCTTCAAAGGTTTATACGTTACAGGCAGAAAATTCAGTGGACCAGATGGACTGGATTGAAAAGATAACTGGAGTAATTACTTCACTGTTGAGTTGTCAAACAGCAGAAAGGCCTCTCCAAACTAATCCGGAAAGAGGTGACTTTAGCTCTCCCGAAGACCTATCAGAGAGTTCTACCCGTGCTCATCAAACAACGGACGACGAAACTGCATCTAAGAACACTACCTCCAGTACCCAATCAGGCGACTCTAGAGGCATGCAGTTTTCTAAGCACAGTGCAACCAGTGAGAAGCCAATTGATGTGCTAAGAAAAGTATGTGGAAACGACAAATGTGCTGATTGTGGTGCACCTGAACCAGACTGGGCATCGTTAAATCTTGGCATACTCGTGTGCATTGAATGTTCAGGAATTCATAGAAACCTTGGTGTGCATATCTCAAAAGTAAGATCATTGACACTTGATGTGAAAGTTTGGGATCCTTATGTCTTAAACATGCTTCAGTCACTGGGCAATATCTTTGCAAACTCAATTTGGGAGGAGCAGTTGCAATCAAACACTAAACTTCAGAGTAATCATATACCTAATGGTCCCTCCAATTCTGAAACTAACAAGCTTGGTCTTGCGAGGAAACCCAATCATAATGATCCGATTTCAGCAAAAGAGAAGTTCGTTCACGCAAAGTATTCAGAGAAATCTTATGTTCGCCAGACGAATGAAAAACAGGACCTACTTCTCGTAGCAAATAAGGTATGGGAGAGTGTCCGCGTCAATGACAAGAAAACGGCGTACCGTCACATCGTTAGCACTGGGGTAGACGTCAATGCTATCAGGGGGCAAACATCATATGACTCTCCCCATGCGTTATCATCAAATAATTCAAATTCATCGAGTGAAGATCTGCACGCAGAAGAGATATCTAACCGCTGCACTGTGCTTCACCTCGCATGCCTTACTGCCGACATCGGCATGGTAGAGCTACTCTTACAGTATGGTGCAGATATAAACGCATCTGATTCCAATGGTCGGAGCCCATTGCATTACTGTATAATCAGTAGGAAGAGTGCGACTGCCAAGATGCTTCTTTTGAGGGGAGCTAATCGACATGCTACTGACAATGAAGGTAATACTCCTCTCAAGCTCATGTCAGAATCAGGTTTTGGAGACAATGAACTTTCCTCTCTATTTACAGAAGGGGGCAGATGA 2103 0.4199 MLNDRLLHFVNVDIHDVKEARKRFEKSSQAYDQAREKFLSLRKSTKMDVAAALEEELYNARSSFEESRFNLVSALSNVEAKKRFEFLEAVSGIMDAHLRYFQQGYEMLHQMEPFIHEVLNYAQRSRENSNNEQIFLVEKMQEYKKQIDIESKHSLSCPYGAPNGDCVQPFARKSNQVIEAVKESATNGKVQIIRQGYLSKRSSNLRADWKRRYFVVDSLGMLYYYRKQWNISASATQPPGQKSSTTENASGLLSRLLSSHYHGGIHDEKSVARHTVNLLTSTIKPDAEQSDLRFCFRIISPSKVYTLQAENSVDQMDWIEKITGVITSLLSCQTAERPLQTNPERGDFSSPEDLSESSTRAHQTTDDETASKNTTSSTQSGDSRGMQFSKHSATSEKPIDVLRKVCGNDKCADCGAPEPDWASLNLGILVCIECSGIHRNLGVHISKVRSLTLDVKVWDPYVLNMLQSLGNIFANSIWEEQLQSNTKLQSNHIPNGPSNSETNKLGLARKPNHNDPISAKEKFVHAKYSEKSYVRQTNEKQDLLLVANKVWESVRVNDKKTAYRHIVSTGVDVNAIRGQTSYDSPHALSSNNSNSSSEDLHAEEISNRCTVLHLACLTADIGMVELLLQYGADINASDSNGRSPLHYCIISRKSATAKMLLLRGANRHATDNEGNTPLKLMSESGFGDNELSSLFTEGGR* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00118 700 MobiDBLite consensus disorder prediction 488 507 - -
Pte3g00118 700 MobiDBLite consensus disorder prediction 337 394 - -
Pte3g00118 700 CDD ArfGap 399 528 - -
Pte3g00118 700 SMART ANK_2a 607 636 IPR002110 GO:0005515
Pte3g00118 700 SMART ANK_2a 640 669 IPR002110 GO:0005515
Pte3g00118 700 CDD PH_ACAP 194 331 - -
Pte3g00118 700 ProSiteProfiles Ankyrin repeat region circular profile. 640 672 - -
Pte3g00118 700 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Pte3g00118 700 SUPERFAMILY BAR/IMD domain-like 3 214 IPR027267 -
Pte3g00118 700 ProSiteProfiles ARF GTPase-activating proteins domain profile. 396 541 IPR001164 GO:0005096
Pte3g00118 700 MobiDBLite consensus disorder prediction 671 700 - -
Pte3g00118 700 SUPERFAMILY PH domain-like 192 347 - -
Pte3g00118 700 MobiDBLite consensus disorder prediction 488 518 - -
Pte3g00118 700 Pfam Putative GTPase activating protein for Arf 399 536 IPR001164 GO:0005096
Pte3g00118 700 SUPERFAMILY Ankyrin repeat 565 686 IPR036770 -
Pte3g00118 700 PRINTS HIV Rev interacting protein signature 427 444 IPR001164 GO:0005096
Pte3g00118 700 PRINTS HIV Rev interacting protein signature 408 427 IPR001164 GO:0005096
Pte3g00118 700 PRINTS HIV Rev interacting protein signature 450 471 IPR001164 GO:0005096
Pte3g00118 700 ProSiteProfiles Ankyrin repeat region circular profile. 607 638 - -
Pte3g00118 700 ProSiteProfiles PH domain profile. 191 327 IPR001849 -
Pte3g00118 700 Gene3D Arfaptin homology (AH) domain/BAR domain 1 149 IPR027267 -
Pte3g00118 700 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 378 542 - -
Pte3g00118 700 Coils Coil 17 37 - -
Pte3g00118 700 Gene3D Arf GTPase activating protein 377 538 IPR038508 -
Pte3g00118 700 ProSiteProfiles Ankyrin repeat profile. 640 672 IPR002110 GO:0005515
Pte3g00118 700 Pfam PH domain 193 326 IPR001849 -
Pte3g00118 700 SUPERFAMILY ArfGap/RecO-like zinc finger 396 535 IPR037278 -
Pte3g00118 700 PANTHER CENTAURIN/ARF 1 694 IPR045258 GO:0005096
Pte3g00118 700 Pfam BAR domain of APPL family 4 131 IPR004148 GO:0005515|GO:0005737
Pte3g00118 700 MobiDBLite consensus disorder prediction 368 394 - -
Pte3g00118 700 Pfam Ankyrin repeats (many copies) 610 661 IPR002110 GO:0005515
Pte3g00118 700 Gene3D - 184 339 IPR011993 -
Pte3g00118 700 Gene3D - 539 690 IPR036770 -
Pte3g00118 700 SMART arf_gap_3 396 539 IPR001164 GO:0005096
Pte3g00118 700 MobiDBLite consensus disorder prediction 337 358 - -
Pte3g00118 700 SMART PH_update 192 329 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00118 Pte-Chr3 1158282 1164332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00118 408 535 C2H2 Transcription Factor Family AT4G21160 38.760 1.22e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00118 K12489 - qsa:O6P43_023509 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00118 3 1158282 1164332 Pte3g00118 3 1158282 1164332 RCT