LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte3g00116	ATGCCATTTGAAATAATGGAGCAAAGGGGCCTGTCTGCCTCTTCTCATGTCTTTGAAGACATACGTTTCTGCTCTGAGAGGAATGGGTTGTGGAAATCAAAAGATATGCACGATCTCTCTGGAGCTGGCCGAGTGGGAGCATCATCTGGAGTCATGTCACCTAGAGCCATTTTTGACACTTCATTACCTGTTGAGCGGACAGACCTGCAGTCAATACAGATGAATCCACCTAGAGAGCTTACTGCGAAACAATTTCTTGGTGGAGAAGAAGGCTTTAGAAATGCATTCAAGCATCCAAATGATTCCTTGCATCAGCATTTGAAACCATGGTCAAATGAAATGACACTGCCAACTTCGTCTTCTAGTTTGGGTGGATCAAAGATTGTTACTGATGCTGGCTCTCATGAGAGTAGCCTATTCTCGAGTTCCCTGTCAGAGATATTTAGTAGTAAAATGAGATTGTCAGCAAATGATGTCCTATTTGATCAGCCTGTACATACAATTGTGTCAAACAATGAGGAAGAATCATGCCTATATCATAGGAAAAATGAGGATGAACTCATTGGGAATCTCCTACCGGATGAAGATGATTTGTTTTCTGGTGCGATTGATGATTTGGGATATAATGCAGATGCCAACGCAGGGACTGACTTGGACGATTTCGATTTGTTTAGCAGTGGTGGTGGTTTGGAGTTGGAAGAGGATAATGTTTTGATTTCCGAAAAGCGAAGAAGTGATTTTTGTGGACAGAATTGTCTAGGTGGTATGAGTGGAAAGCATCAGTTAGTTGAACATCCTTCCAGAACTCTTGTTGTGAGAAATATTGATAGCAATATTGAAGACTCAGAAGTTACGGTTTTGTTTGAGCAATTTGGAGATATTAGATCCCTTTTTACAGCATACAAGCACCGGGGTTATGTTATGGTTTCATATTATGACATAAGGGCATCCCAAAATGCAATGAGAGCACTTCAAAAGAAACTGTCGAGTCATAGGAAACTCGACATACATTATTCAATACCAAAGGAGAATTGTCCAGAGAAGGATATAAACCATGGTATACTTGCTGTATCTGATCTTGATCCTTCTGTTTCTCTGGATGAGCTTCAACATATTTTTGGATTTTATGGAGAAATCAAAGATGTCTATGAGATTCCAGAAAAGCATCAAGTGAAATTTATAGAGTTTTATGACTTGCGTGCTGCTGCTTCTGCTCTTGAGTCATTAAGTGACAGTAAAATTGCTGGCAGGCAGATTAAGCTTGAACTATGTGCTTTTTATCACTTAATATTAATTATTGCAGCAGCAACTACAGGAACAAGTGAGCCCATATGTTCTGACCTTGGACATCTGGGATCGTATTTCTCAATGGGACCGATTGCGACTGCATATGCAGGGAGTTCACTTCCTAATGGCTATAGGAAAGCTAGCTTGGCAAACACTTTACCTACCACAGTGGGAAGTTCATCTGCTGAGAAACTAGTTGGCTTTGTCAAGGGAGTGAAACCTACATCTGTTCCAAGATTCCATGCTCATTCCTTGCCAGAGTATCATGATACTGTAGCCAATGGTGTTTTCTGCAACTCTCCAAGTAATACTATGAATTTTGCTGGCAATATTGGGTCCAGATTGGCAGAAGGTAGTAACCGTTTTGGATCTCCTGGAAATGGTAACTACCCACCTCAGGGACTTCATTACATGTGGAACAAACCCAATGTGCATCAGCAACATCCGGATCACATGATGTGGCAGAACTCACCCCCATTTGTAAATGGTGCCTGTGCTCCCCACCTTTCCCAAATGTCTGGATATCCTAGAGTGCCACTTCATATGCTGAGAACATCGCACATAGATCACCATGTTGGATCAGCACCAGTTAATGGCTTCCCCTGGGACAGGCGACTTAACAATCTAGGAGAATCTCCTGAAGCTTCTAGCTTTCACTTAGGTTCTCTTGGGAATGCAGGTTTTCCTGGTACATGGCAATTGAATCCTGCAAATATGTCACCTCAGGACATGTTTTCTCATGTTAGTGGGAATCACATGGACATGACAGCAAATGCTGGACAGAGCTCTTCTAAACAGATTTGCCGTGCATTCCCTGGGAGGAATCCTATGATTTCCATGTCTAAGCATGATGCTGCAAGTGAACGTTCTAGAATCATGTATCAAAGTAGAGGTGATTCGAATACAAATAATGCTGACAAGAAACAATTTGAACTAGATATTGAGCGCATAGTTCATGGGGAAGACAGCCGAACGACACTCATGATAAAGAATATCCCTAACAAGTACACTTCAAAGATGCTACTTGCAGCCATAGATGAGCAATGCCGGGGAACATATGATTTTATTTATCTACCTATTGACTTCAAGAACAAATGCAATGTTGGCTATGCATTCATCAATATGATCGATCCAAGTCAGATTATTCCATTTTACCAGGCATTTAACGGGAAGAAGTGGGAGAAGTTTAACAGTGAAAAAGTGGCCTCCCTTGCTTATGCAAGGATTCAGGGGAAAGTTGCACTTATTGCTCACTTTCAGAATTCAAGCTTGATGAATGAAGATAAGAGGTGCCGGCCTATTCTTTTCCATACAGATGGTCCAAACGCTGGTGATCCGGAGCCATTCCCAATGGGAACAAACATTAGATCCAGACCTGGAAAATATCGTTCCTCTGGCAACGAGGAGTATCGTAGCCAAGGGAACCCTTCAACATCAACAGGTGGAGAGAAGCCTTCAAGTGCAATGAATTCTTCACTGGCTTCTGACTGA	2778	0.419	MPFEIMEQRGLSASSHVFEDIRFCSERNGLWKSKDMHDLSGAGRVGASSGVMSPRAIFDTSLPVERTDLQSIQMNPPRELTAKQFLGGEEGFRNAFKHPNDSLHQHLKPWSNEMTLPTSSSSLGGSKIVTDAGSHESSLFSSSLSEIFSSKMRLSANDVLFDQPVHTIVSNNEEESCLYHRKNEDELIGNLLPDEDDLFSGAIDDLGYNADANAGTDLDDFDLFSSGGGLELEEDNVLISEKRRSDFCGQNCLGGMSGKHQLVEHPSRTLVVRNIDSNIEDSEVTVLFEQFGDIRSLFTAYKHRGYVMVSYYDIRASQNAMRALQKKLSSHRKLDIHYSIPKENCPEKDINHGILAVSDLDPSVSLDELQHIFGFYGEIKDVYEIPEKHQVKFIEFYDLRAAASALESLSDSKIAGRQIKLELCAFYHLILIIAAATTGTSEPICSDLGHLGSYFSMGPIATAYAGSSLPNGYRKASLANTLPTTVGSSSAEKLVGFVKGVKPTSVPRFHAHSLPEYHDTVANGVFCNSPSNTMNFAGNIGSRLAEGSNRFGSPGNGNYPPQGLHYMWNKPNVHQQHPDHMMWQNSPPFVNGACAPHLSQMSGYPRVPLHMLRTSHIDHHVGSAPVNGFPWDRRLNNLGESPEASSFHLGSLGNAGFPGTWQLNPANMSPQDMFSHVSGNHMDMTANAGQSSSKQICRAFPGRNPMISMSKHDAASERSRIMYQSRGDSNTNNADKKQFELDIERIVHGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFIYLPIDFKNKCNVGYAFINMIDPSQIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKVALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRSRPGKYRSSGNEEYRSQGNPSTSTGGEKPSSAMNSSLASD*	926

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte3g00116	925	Coils	Coil	314	334	-	-
	Pte3g00116	925	MobiDBLite	consensus disorder prediction	865	925	-	-
	Pte3g00116	925	CDD	RRM3_MEI2_like	756	841	IPR034454	-
	Pte3g00116	925	SUPERFAMILY	RNA-binding domain, RBD	755	839	IPR035979	GO:0003676
	Pte3g00116	925	CDD	RRM1_MEI2_like	267	343	IPR034453	-
	Pte3g00116	925	Gene3D	-	257	351	IPR012677	-
	Pte3g00116	925	Gene3D	-	352	424	IPR012677	-
	Pte3g00116	925	MobiDBLite	consensus disorder prediction	887	925	-	-
	Pte3g00116	925	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	121	911	-	-
	Pte3g00116	925	Pfam	RNA recognition motif 2	753	849	IPR007201	-
	Pte3g00116	925	SUPERFAMILY	RNA-binding domain, RBD	266	424	IPR035979	GO:0003676
	Pte3g00116	925	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	268	341	IPR000504	GO:0003723
	Pte3g00116	925	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	270	334	IPR000504	GO:0003723
	Pte3g00116	925	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	356	420	IPR000504	GO:0003723
	Pte3g00116	925	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	353	426	IPR000504	GO:0003723
	Pte3g00116	925	SMART	rrm1_1	269	337	IPR000504	GO:0003723
	Pte3g00116	925	SMART	rrm1_1	755	831	IPR000504	GO:0003723
	Pte3g00116	925	SMART	rrm1_1	354	422	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte3g00116	Pte-Chr3	1122780	1128838	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte3g00116	-		-	qsa:O6P43_030654	987.638

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte3g00116	3	1122780	1128838	Pte1g02041	1	41511070	41518498	RCT
	Pte3g00116	3	1122780	1128838	Pte3g00116	3	1122780	1128838	RCT