Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00071 ATGGGAGATGAGAGCCATGGCAATGTGCCAAATGGGATCACCAGAGGAAGTCCTGAAAGCCCATGTTTAAAGACCAACACTGCTTCTGGTTCTGGCTGCAACGGCAATAACAACAACAACCATAACAAAGAACAAGACCGCTTCCTTCCCATTGCCAATGTTGGTCGTATCATGAAAAAAGTGATACCGAGCAATGGGAAAATCTCAAAGGATGCCAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATTAGCTTTGTCACTGGGGAAGCTTCTGATAAATGTCAAAGAGAAAAGAGAAAGACCATAAACGGAGACGATATCATATGGGCCATCACTACCTTAGGCTTTGAGGATTATGTGGAACCTCTAAAATCTTATCTTCAGAAATACAGAGAGGTTGAAGGAGAAAGACTTAATGTTCCGAAGCAAAACCGTTCTGAGCAAAAGATACTTCAGCAGAACCAGCCACAGCATCCTCATCCTCATCATCATGAGGATCATAACAATTTTCCATTACCTAGTGTATATTCTTCAACAAATCTCATTCCTCAGCAGCCGTGTATGGCTGCTGATCAACCATTTAGCTTACCATTTACTCCACCTTCAATTCAAAAACATCTGCAGCCTCAAGATCACCAGATTGATTCAGTGGGGCATTGGTAA 666 0.4204 MGDESHGNVPNGITRGSPESPCLKTNTASGSGCNGNNNNNHNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYREVEGERLNVPKQNRSEQKILQQNQPQHPHPHHHEDHNNFPLPSVYSSTNLIPQQPCMAADQPFSLPFTPPSIQKHLQPQDHQIDSVGHW* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00071 221 MobiDBLite consensus disorder prediction 193 221 - -
Pte3g00071 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 48 112 IPR003958 -
Pte3g00071 221 MobiDBLite consensus disorder prediction 198 212 - -
Pte3g00071 221 MobiDBLite consensus disorder prediction 10 44 - -
Pte3g00071 221 SUPERFAMILY Histone-fold 45 162 IPR009072 GO:0046982
Pte3g00071 221 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Pte3g00071 221 PRINTS CCAAT-binding transcription factor subunit A signature 114 132 - -
Pte3g00071 221 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Pte3g00071 221 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 29 165 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte3g00071 221 MobiDBLite consensus disorder prediction 1 44 - -
Pte3g00071 221 ProSitePatterns NF-YB/HAP3 subunit signature. 79 95 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pte3g00071 221 FunFam Nuclear transcription factor Y subunit B-3 37 161 - -
Pte3g00071 221 Gene3D Histone, subunit A 35 170 IPR009072 GO:0046982
Pte3g00071 221 MobiDBLite consensus disorder prediction 148 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00071 Pte-Chr3 805758 806423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00071 3 222 CCAAT-HAP3 Transcription Factor Family AT2G13570 58.150 1.82e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte3g00071 CBFD_NFYB_HMF 2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00071 K08065 - cit:102611608 302.367