Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00057 ATGGCTCCTGCCACCTCAACTGCGGCTACGGCGGCTCATAAGCTTGCTCGAGTCAGTCGCCCCCTTCATGTAGCTGGACGTAGGAAACCTTCGGACTCTCCTTCTCCGAAAAAGTACAGGTCGATCACGGAGATAATGGAGAAAGCCCCTTACGCTGTGGTGAATGGAGCTGATTACAGCAATACCATGTGTGACCAATGTGGCTTAGGAGACCGACCTGAAGAGCTGATTCTGTGTGACAAATGCGACAAGGGCTTTCACATGAAATGTGTGAGACCTATCATTGTCAGAATCCCAATTGGATCATGGCTTTGTCCTAGCTGCTCTAGCAACAGAAGAGTGAGAAATTGTAAAAAGCGCCGAAGACGTGCTGCACCACTTGTATTGCAAAAGAAGAGGAGGAGGTTGTTACCATATGTCCCAACAGAAGATCCTGCTCGAAGGCTGAAACAGATGGGCTCCCTTGCAGAGGCATTATCAGTATTAAAGATGGAATTTAGTGATGATCTCACCTACTCACCTGTAATGGCTCCTAGATCTGCAAATAAGTCAAAGTTTGAAAATGGTGGCATGCAGGTTCTTCCAAAAGAAGATGTTGAGACCTTGGAATACTGCAGGGCTATGTATAGAAGAGGCGAATGTCCTCCTCTTATGATTACTTATGATTCATTTGAAGGCTTTACGGTTGAGGCAGATGGGCCAATCAAAGACATGACATTCATTGCAGAGTATACAGGCGATGTGGATTACCTTAAGAATCGGGAACATGATGATTGTGACAGCCTAATGACTCTTCTTCTTACGAAGGATCCATCGAAAAGCCTGGTTATTTGTCCCGATAAACGTGGAAATATTGCTCGCTTTGTTAACGGCATTAATAATTTTACTAGGGAAGGTAGAAAGAAGCAGAACTGCAAATGCGTGAGGTACAGCGTCAATGGAGAATGCAAGGTCATTTTGGTTGCTACTCGCGATATTGCCAAAGGGGAAAGGCTTTATTATGACTACAATGGATATGAGCATGAATACCCCACTCATCATTTCCTCTGA 1050 0.4486 MAPATSTAATAAHKLARVSRPLHVAGRRKPSDSPSPKKYRSITEIMEKAPYAVVNGADYSNTMCDQCGLGDRPEELILCDKCDKGFHMKCVRPIIVRIPIGSWLCPSCSSNRRVRNCKKRRRRAAPLVLQKKRRRLLPYVPTEDPARRLKQMGSLAEALSVLKMEFSDDLTYSPVMAPRSANKSKFENGGMQVLPKEDVETLEYCRAMYRRGECPPLMITYDSFEGFTVEADGPIKDMTFIAEYTGDVDYLKNREHDDCDSLMTLLLTKDPSKSLVICPDKRGNIARFVNGINNFTREGRKKQNCKCVRYSVNGECKVILVATRDIAKGERLYYDYNGYEHEYPTHHFL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00057 349 SMART PHD_3 63 109 IPR001965 -
Pte3g00057 349 Pfam SET domain 242 337 IPR001214 GO:0005515
Pte3g00057 349 CDD PHD_RSF1 63 108 - -
Pte3g00057 349 Pfam PHD-finger 63 110 IPR019787 -
Pte3g00057 349 MobiDBLite consensus disorder prediction 1 39 - -
Pte3g00057 349 ProSiteProfiles Zinc finger PHD-type profile. 61 111 IPR019787 -
Pte3g00057 349 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 115 348 - -
Pte3g00057 349 ProSitePatterns Zinc finger PHD-type signature. 64 108 IPR019786 -
Pte3g00057 349 ProSiteProfiles SET domain profile. 215 337 IPR001214 GO:0005515
Pte3g00057 349 CDD SET_ATXR5_6-like 212 349 - -
Pte3g00057 349 FunFam Histone-lysine N-methyltransferase ATXR5 120 349 - -
Pte3g00057 349 Gene3D SET domain 123 349 IPR046341 -
Pte3g00057 349 SUPERFAMILY FYVE/PHD zinc finger 35 109 IPR011011 -
Pte3g00057 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 122 IPR013083 -
Pte3g00057 349 SUPERFAMILY SET domain 209 337 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00057 Pte-Chr3 724394 728237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00057 57 114 C2H2 Transcription Factor Family AT3G01460 37.931 5.96e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte3g00057 SET 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00057 K24406 - jre:108990487 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00057 3 724394 728237 Pte3g00057 3 724394 728237 RCT