Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00051 ATGAAATTTACAAGATCCATTACTCACTTTCACTCACGAAGGCTGTATTTGCAATTCATCCCTTGCGAGGGAGCTACAATGTGGAGACCTTTCTTGCCTAGAAGGCTTTTGCGCTTCTCTTTGCATTCATCATCATCTTCAACAACAGCTTGTCCATGCGTTGTACGGAGCTTTCACTTCTCATCATGTTTGAACTATTCATCTCATGCTCCTTCCTTTTTGAGACGGCGAGAGGAAGAGTCTCACAATGTGAGGGTTTCAGTGTGGTGGGATTTTGAGAACTGTCATTTGCCCATTGGCGTCAATGTATACAACGTCGCTCCTGTGATAACTGCAGCTCTCAGGGCTAATGGGATAGGGGGTCCTATTCAATTTACAGCTTTTGGTGATGTTTCACAGCTGTCTAGGGCAAACCAGGAGGCTCTTTCCTCCACTGGGATTATTCTCAATCATATCCCAAACGGAGGGAAAAACAGTGCCGATAGATCTCTTCTTGTTGATCTAATGTTTTGGGTTCCTCAGAATCCTCCCCCAGCCCATTTCTTTTTGATCTCTGGTGATAGGGACTTTGCTGTTGTTTTGCACCGCCTAAGAATGAACAACTACAACATATTGCTTGCAAGCATCGACAACGCTCCTGACGCTCTTTGTAGTGCGGCAAGTATCATGTGGCATTGGAACTCGCTGGTTAGAGGAGAAAAACTTATTGGAAAACATTTTAACTACCCTCCAAATGGTTCCTATGGTTCTTGGTATGGCCATTTTAAAGTGCCCATTGAAGATCCCTTCTCAACTTCCAAACAACCTACAAGTTTGAATACTGAGGAGGCATCGGAATCCACTCCAGATTCAAAGGTTCGTCCTGTTCCAAAATCTGTTTTGAAGCAAATACAACGTTTACTGAATTCACATCCGAAAGGTATCTCCCTTGATCATCTTCGTTCAGAATTGGTGAAGGTTGATGGGAACTTAGACAAAGAATATTATGGCCACAGGAAATTCTCCCGTTTCCTTTTATCATTGCAAAATATTTTGCAAATTCAAACTAGAGTTGATGGTCAGTCTATTGTGAGAAGTGTCAGCCACAAGTCTCCTGAGCCATTTGAGCCTAGTGCGACCCCCTCAATATTATCTGGTGCAGACAATAAAGCTGTGGAAAGTACATCTCCAAAACTAGGTGATGAGACTCAAAGTACCAATGCAAACTATGATGCAAAGGTAAAGTTTAAATTTGAAAAACAAACAAAAGAGCTTCTAAACGAGGCTCGACAGCCAATTCCACACAGAGAATCTTTGACAGAAGCCTCCACATACAGGAAAACACCAGAGTGTCAGATTCTTGAAACCTGTGCAGGTCATCTTTCACATAAGGCAGAGTCTCTCCATTCGCCCAATGAAAAAGTCATGGAGGTGGCTATTGTACAAGAAACTGAAAGTCCATCGCTAAAGACAGAAAAAAACATGCTGACAGTGGAAAATCAAATCCCAAAAACTGAGGTAGGTTTTTTCAAGAGGATGTGGGAAAAATTATTTCCCAAGTATCATATCTCGGAGGCTAAAATGGATAAAAGCTTGGGAAATATTAGTTCTTTGGAGGGTCAATATGCTATAGACAAAAAAATTTCAATTGACGATAGACCTCAGAAGGCTAGACCTGAAGATAAACATGCTAACTCAACAAAAGATGGATTTGATCGAGAATGTCAGATAACTCATTCTTCAATTGTTGTTAGTCCTGAGCTCAAACTTAAAAGCTCTGAAACTTCTACAAGTGATAAAGATTCTTCTAGCAGTCATAAAGGTATTTATGATCGAGTTGTAAATTGGTGGCAATCAAGGAGAAGGGGGAAGGTCTTAGAAGATACAAATGGGCTGGATAAAAATGAAGCGAATCTGACAAGAAAGCAGTTTGAAAAACCTGAGTTATTTGCCGACTCTTCCTTTTGGAGTGACGTGGAAGCTTTCCTAGGTACCAACAAAGGATCTGGTGTTGTCTTGCAGGCCAAAACAAGGAAAGAGATGGGTCAAAATTTGCAAAAGGAAGGACCCTGGATTCTAAAATCTCTTGGTGAAAACGATCTCCTTCACTTAGTGCATTTGTTAATATCAGAGAGGAAATGGGTTGAAGAACACCCTTTTCAATCATCACCTTTCAGGCTAACTAAACCAGTTGAAAACAGTCCTTCTGTAAACCATTCTCAGGAATCAAATGGATTGAGTTCTCTCTTTCTAAGCCAAACAACCCGTCCCAACTTGCGAAAATCATTAGACCATGATGGAGAAAAGAATTGTCGCAGTGTTTGTCACCCTGGAACTGGAATATTGCCACCTGACTTTGGCATGAAACATTTAAGCAGGTCTAGAGCCGATGTATTATCGGATTGTCAAAAACTTGTGAAAGAAGTATTGAGGGAGAACCCTGGGGGATTTAATTTAGCATCTTTCCGAAAATTGTTCCTTGAGAGGTACAATTATCCTCTTGACATACAAAAGCTTGGATATCAGAAGTTGGCATCTTTGATGCAAATTATGCCTGGAGTGACGGTGGAATCGAGTTACATCTTTCCTTGTTCTTCTGTTATTGTAACTGCCCCACTCGATACTGATAATGGCCATTCTGGTACTGCACCGGCTAGTGCCGACAATGAAGTTTCTGAATCAGGGAAGAAGGTTGACAATAGTGACTCCCAATGGGAAGAATTGGGGCCCATTTCCAACACAAGTTCAAACCGAAGTGAGGAGGATTCAAGATCTAAAGGCGATGCATTTGACCTTTTAGGAATATATAAGGAGCCTGGTTATGAACCCGCCCTTTCTGAGGATGATTCTTCTGACTCAGATGCTGAGAAGACCAGTTCAACTAGATCAGAAGGGCTAAGACAGTTCAAATCTAAGAATGAAACGTCTTCATTGTTGGAAGTGCTTGATTCATGGCACAACCAGAAGGAAGGTGACAACAGCAAAACCCAATCCAAGGATGTCGATAGCATCCTTTGCCTTTCAAGTGCTGCCTCCAAGGGTCCATCTGCTGCAACTTCGATGGGAAATTACAGGCAGAAGATGAGATCCCAAAAGCGTTACACATTTATATCGGACACTTTCACGACAGACAAGGACAAGCAGATGGATGTGACATTAGGTTCATGA 3147 0.4169 MKFTRSITHFHSRRLYLQFIPCEGATMWRPFLPRRLLRFSLHSSSSSTTACPCVVRSFHFSSCLNYSSHAPSFLRRREEESHNVRVSVWWDFENCHLPIGVNVYNVAPVITAALRANGIGGPIQFTAFGDVSQLSRANQEALSSTGIILNHIPNGGKNSADRSLLVDLMFWVPQNPPPAHFFLISGDRDFAVVLHRLRMNNYNILLASIDNAPDALCSAASIMWHWNSLVRGEKLIGKHFNYPPNGSYGSWYGHFKVPIEDPFSTSKQPTSLNTEEASESTPDSKVRPVPKSVLKQIQRLLNSHPKGISLDHLRSELVKVDGNLDKEYYGHRKFSRFLLSLQNILQIQTRVDGQSIVRSVSHKSPEPFEPSATPSILSGADNKAVESTSPKLGDETQSTNANYDAKVKFKFEKQTKELLNEARQPIPHRESLTEASTYRKTPECQILETCAGHLSHKAESLHSPNEKVMEVAIVQETESPSLKTEKNMLTVENQIPKTEVGFFKRMWEKLFPKYHISEAKMDKSLGNISSLEGQYAIDKKISIDDRPQKARPEDKHANSTKDGFDRECQITHSSIVVSPELKLKSSETSTSDKDSSSSHKGIYDRVVNWWQSRRRGKVLEDTNGLDKNEANLTRKQFEKPELFADSSFWSDVEAFLGTNKGSGVVLQAKTRKEMGQNLQKEGPWILKSLGENDLLHLVHLLISERKWVEEHPFQSSPFRLTKPVENSPSVNHSQESNGLSSLFLSQTTRPNLRKSLDHDGEKNCRSVCHPGTGILPPDFGMKHLSRSRADVLSDCQKLVKEVLRENPGGFNLASFRKLFLERYNYPLDIQKLGYQKLASLMQIMPGVTVESSYIFPCSSVIVTAPLDTDNGHSGTAPASADNEVSESGKKVDNSDSQWEELGPISNTSSNRSEEDSRSKGDAFDLLGIYKEPGYEPALSEDDSSDSDAEKTSSTRSEGLRQFKSKNETSSLLEVLDSWHNQKEGDNSKTQSKDVDSILCLSSAASKGPSAATSMGNYRQKMRSQKRYTFISDTFTTDKDKQMDVTLGS* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00051 1048 MobiDBLite consensus disorder prediction 361 398 - -
Pte3g00051 1048 PANTHER LIMKAIN B LKAP 71 801 IPR024768 GO:0005777|GO:0010468
Pte3g00051 1048 ProSiteProfiles OST-type HTH domain profile. 791 866 IPR025605 -
Pte3g00051 1048 Pfam OST-HTH Associated domain 670 712 IPR025677 -
Pte3g00051 1048 Pfam NYN domain 85 220 IPR021139 GO:0004540
Pte3g00051 1048 MobiDBLite consensus disorder prediction 718 737 - -
Pte3g00051 1048 Pfam OST-HTH/LOTUS domain 792 851 IPR025605 -
Pte3g00051 1048 Pfam OST-HTH/LOTUS domain 290 357 IPR025605 -
Pte3g00051 1048 ProSiteProfiles OST-type HTH domain profile. 289 361 IPR025605 -
Pte3g00051 1048 CDD PIN_limkain_b1_N_like 85 208 - -
Pte3g00051 1048 Gene3D - 289 365 IPR041966 -
Pte3g00051 1048 MobiDBLite consensus disorder prediction 375 398 - -
Pte3g00051 1048 MobiDBLite consensus disorder prediction 265 279 - -
Pte3g00051 1048 Gene3D - 77 228 - -
Pte3g00051 1048 MobiDBLite consensus disorder prediction 265 289 - -
Pte3g00051 1048 CDD LOTUS 792 849 - -
Pte3g00051 1048 MobiDBLite consensus disorder prediction 542 564 - -
Pte3g00051 1048 MobiDBLite consensus disorder prediction 943 962 - -
Pte3g00051 1048 MobiDBLite consensus disorder prediction 871 966 - -
Pte3g00051 1048 Gene3D - 786 853 IPR041966 -
Pte3g00051 1048 MobiDBLite consensus disorder prediction 719 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00051 Pte-Chr3 677580 684115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00051 84 309 C2H2 Transcription Factor Family AT5G61190 35.371 8.03e-39 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00051 - - cave:132166785 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00051 3 677580 684115 Pte3g00051 3 677580 684115 RCT