Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00050 ATGGAAAAAATGGATTTGGATGATTTCCGGTCTATATTGGAGACGGTCGGTGTGGATGTGTGGTTGTTCATTGATACTGCAATCACTCTGGCTTCGTTGGATTACGGAGAGGAACTGAAGCGCCGTAGAGATGGGATTGTTGAGCGGGTTTATGCAGCAACCATCGATTGTGACAGATGCAGAAATTGCGATGGTAATCTTCGTTTGCCTAATGGCCGTGAATCCAAAGCTGCAGCGATGAAACAGACCGGCACCGTAGCCGCACTAAAAATTGCCGTTTCGCCTCCCACTCCTCAATCCAGTGGTAAAGATGAAGAGGAGGAAGATTTAGATCCGTACGCTGGTTTGTTTGACGATGAACAGAAGCAGATTTTAGAGATCAAAGAGCAGCTTGAAGATCCTCAGCAGTCTGAAGATTCTCTTGTAGAATTGCTACAAAGTCTTGCAGATATGGATATCAAGTTCCAGGCACTCAAGGAAACTGATATAGGGAGGCATGTCAATCAGTTCCGGAAGCATTCATCCTGCGATGTTAGAAGATTGGTCAAGTTACTCGTCAGGAAATGGAAGGATAAAGTTGATGAATGGGTGAAAAACCAGCGTGGAGAGGGAGGATCTTCTGCTCTTATGGATGATGGAGATTCACCCCAACTAAGAAATGCCCAGAATTGCAATCACCAGGTTTCTCATTTTGCAAATTCTCCAAATCGACGCACTGTGATTTCTGGCTCAGATAGAAACAACTCAGAACCGGAACCAAAGCCAAAAGCGGTTCCTCGAAAAGAAACCCCTCAAAAACCAGTCCCATCAAATACTGTTTCTCCATCTCCTCCTCCTCAATACAGAGAGAGAGACATGAATTACGAGGCGGAAAAACTAGCTTCAGCGAGAAAGCGGCTCCAAGCGAGTTACAAAGAAGCTGAAAATGCCAAGAAGCAAAGAACAATTCAGGTAATGGATATACATGATATACCAAAACCAAAGAATGCCTTCTTTGCTAAGAACAAGGCCGGTGGTGGTGGTTCTCACGGAAGGCACTGGTGA 1044 0.4502 MEKMDLDDFRSILETVGVDVWLFIDTAITLASLDYGEELKRRRDGIVERVYAATIDCDRCRNCDGNLRLPNGRESKAAAMKQTGTVAALKIAVSPPTPQSSGKDEEEEDLDPYAGLFDDEQKQILEIKEQLEDPQQSEDSLVELLQSLADMDIKFQALKETDIGRHVNQFRKHSSCDVRRLVKLLVRKWKDKVDEWVKNQRGEGGSSALMDDGDSPQLRNAQNCNHQVSHFANSPNRRTVISGSDRNNSEPEPKPKAVPRKETPQKPVPSNTVSPSPPPQYRERDMNYEAEKLASARKRLQASYKEAENAKKQRTIQVMDIHDIPKPKNAFFAKNKAGGGGSHGRHW* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00050 347 MobiDBLite consensus disorder prediction 228 286 - -
Pte3g00050 347 MobiDBLite consensus disorder prediction 327 347 - -
Pte3g00050 347 ProSiteProfiles TFIIS N-terminal domain profile. 119 196 IPR017923 -
Pte3g00050 347 SMART TFS2_5 124 195 IPR003617 GO:0005634
Pte3g00050 347 MobiDBLite consensus disorder prediction 202 221 - -
Pte3g00050 347 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 4 347 IPR044790 -
Pte3g00050 347 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 206 IPR035441 -
Pte3g00050 347 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 118 206 IPR035441 -
Pte3g00050 347 MobiDBLite consensus disorder prediction 228 248 - -
Pte3g00050 347 Pfam TFIIS helical bundle-like domain 144 193 IPR017923 -
Pte3g00050 347 Coils Coil 290 317 - -
Pte3g00050 347 CDD TFIIS_I 121 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00050 Pte-Chr3 671890 675208 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pte3g00050 Med26 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00050 - - jre:108987818 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00050 3 671890 675208 Pte3g00050 3 671890 675208 RCT
Pte3g00050 3 671890 675208 Pte1g02121 1 42389289 42390646 RCT
Pte2g02614 2 45179850 45181899 Pte3g00050 3 671890 675208 RCT