Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00049 ATGCTTTGTAAGTGCGCCTGCAAGGATTTTATATATTGTATTTGTGAATCTTATCATGAGGTCTTTTTGAACTGCAGCTACATTGAATTCTTTGATGTCATGGCTGTGCCAATGGCAATTGCTCTTTCTGGCCAGCTGCTTCTCGGACAACCTGTCATGGTTAAGCCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCAGTGGGGCTGCAGGTAATGCTGGTCAATATGGAGCAGTTGATAGAAAACTGTATGTAGGGAACCTACACTTCAACATGACCGATACTCAGTTAAAAGAGATTTTTGAAGCATTTGGTAAGGTGGAGGCTGTGCAACTTCCGCTGGATGCGGAGACAGGACATTGCAAGGGTTTTGGATTTGTTCAATTTGCTAATCTTGAGGATGCCAAAGCTGCTCAGAGTCTGAATGGAAAACTGGAGATTGCTGGTAGAACAATCAAGGTCTCATCTGTAACAGATCATGTTGGTACTCAAGATACAAATGCCAAATCTGCAGATTTTGATGATGATGAAGGTGGCTTGGCTTTGAATGCCCATTCAAGAGCTATGCTGATGGCAAAACTTGATCGTTCTGGCACTGCTACAAGTATTGCTGGGGGCATTGGTGTTCCAGTGCTTAATGGTGCTACCCCTACTCCACCAGTTATTTTGCCTATTATTGGGCAACCTCCAGTCAATGTACCAGTGCTAAGCACTCCACTTCAGCCTAACCCAGTCGGGGAACCTGTTGGAATTCCTAGTGAATGTCTTCTGCTTAAAAACATGTTTGATCCGACTACTGAGATGGAACCTGATTTTGATGTCGACATTAAAGATGACGTTGAAGAAGAATGTTCTAAATTTGGCCTGGTTAAGCATATTTACGTGGAAAAAGACAGTCCTGGTTACGTGTATCTGAGGTTTGAAACAGTGCAGGCAGCTAGTGCCGCTCAGCAAGCTATGCACAATAGATGGTTTGCTCGCAGGTCAATTTCAGCGTTGTTCATGCCTCCGCAGTTGTACGAAGCCAAGTTTAAAGGCTAA 1050 0.4371 MLCKCACKDFIYCICESYHEVFLNCSYIEFFDVMAVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGNAGQYGAVDRKLYVGNLHFNMTDTQLKEIFEAFGKVEAVQLPLDAETGHCKGFGFVQFANLEDAKAAQSLNGKLEIAGRTIKVSSVTDHVGTQDTNAKSADFDDDEGGLALNAHSRAMLMAKLDRSGTATSIAGGIGVPVLNGATPTPPVILPIIGQPPVNVPVLSTPLQPNPVGEPVGIPSECLLLKNMFDPTTEMEPDFDVDIKDDVEEECSKFGLVKHIYVEKDSPGYVYLRFETVQAASAAQQAMHNRWFARRSISALFMPPQLYEAKFKG* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00049 349 CDD RRM3_RBM39_like 256 339 - -
Pte3g00049 349 CDD RRM2_RBM23_RBM39 86 163 - -
Pte3g00049 349 Gene3D - 70 176 IPR012677 -
Pte3g00049 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 333 IPR000504 GO:0003723
Pte3g00049 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Pte3g00049 349 Gene3D - 252 349 IPR012677 -
Pte3g00049 349 SUPERFAMILY RNA-binding domain, RBD 84 336 IPR035979 GO:0003676
Pte3g00049 349 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 26 347 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pte3g00049 349 SMART rrm1_1 258 336 IPR000504 GO:0003723
Pte3g00049 349 SMART rrm1_1 85 158 IPR000504 GO:0003723
Pte3g00049 349 NCBIfam splicing factor, CC1-like family 26 347 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pte3g00049 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Pte3g00049 349 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 177 275 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00049 Pte-Chr3 663464 666295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00049 56 157 Eukaryotic Initiation Factors Gene Family AT4G34110 37.864 1.17e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00049 K13091 - qsa:O6P43_030384 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02618 2 45202204 45208048 Pte3g00049 3 663464 666295 RCT
Pte3g00049 3 663464 666295 Pte3g00049 3 663464 666295 RCT