Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00033 ATGCAATATGCATGCATCACATGCTCGTTGATACCTGATAGTTGCAGCTTAGAGAGCATGAATTCTCCTATGCAATTCGTCTCCTCGAGGAGGATGGGCATTTATGAGCCTCTCCACCAAATTAGTACATGGGGACAAAACTTCAAAAGTAACAGTAATATGACCCAAACTGTGCCTATCATTGGGGAGGCTGACGTGAAACTTCTTGATACTCAGTCAGAGGATGCTTCTCAGGGAACACTTGGAACTCCTCAAAATTTTGACCAAGAAGCAAGTAAACCCACAGATAAGATACAAAGACGCCTTGCACAGAATCGAGAAGCTGCTCGTAAAAGTCGCCTGCGGAAAAAGGCCTATGTTCAGCAATTAGAAACAAGTCGTTTAAAGCTGATGCAGTTAGAGCAAGAACTCGAGCGAGCCAGACAACAGCAGGGATTTTGCATAAGCGGTGGACTAGATGCTAATCATCTCAGCTTTGCTGGATCTGAAAATCCAGGAGTGACGGCATTTGAGATGAAGTACGGGCATTGGGTTGAAGAACAAAATAGACAGATTTGTGAATTGAGGAATGCTTTAAATGCTCATATCGGTGATATGGAACTCCGGATACTTGTAGAGACTATCATGAATCACTATTTTGAACTCTTCAGGATGAAATCAACTGCTGCAAAAGCTGATGTTTTCTATATAATGTCTGGCATGTGGAAAACTACAGCTGAACGCTTTTTTTTGTGGATAGGAGGTTTTCGTCCTTCAGAGCTTCTTAAGGTTCTTGTGCCTCAAATTGACACACTGACAGAACAACAACAAAAGGATGCCTCTAATCTTCGACAGTCATGTCAACAAGCAGAAGATGCTTATTCGCAGGGCATGGATAAGCTTCAGCAAATTTTGTCCAACACAATAGCAGCTAGTCAAATGGTTGAAGGAACTTACATGCCTCAGATAGCAACTGCAATGGACAAGTTGGAAGCTTTGGTGAGCTTCGTGAACCAGGCCGACCATCTTCGACAGGAAACTCTGCAGCAGATGCACCGAATCCTTACAGTTCGTCAGTCAGCTAAATGCTTGCTTGCTTTGGGAGAATACATTCAAAGACTGCGGGCATTGAGCTCACTCTGGGCCAATCGTCCTCGTGAACCTGCATAG 1149 0.4378 MQYACITCSLIPDSCSLESMNSPMQFVSSRRMGIYEPLHQISTWGQNFKSNSNMTQTVPIIGEADVKLLDTQSEDASQGTLGTPQNFDQEASKPTDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLEQELERARQQQGFCISGGLDANHLSFAGSENPGVTAFEMKYGHWVEEQNRQICELRNALNAHIGDMELRILVETIMNHYFELFRMKSTAAKADVFYIMSGMWKTTAERFFLWIGGFRPSELLKVLVPQIDTLTEQQQKDASNLRQSCQQAEDAYSQGMDKLQQILSNTIAASQMVEGTYMPQIATAMDKLEALVSFVNQADHLRQETLQQMHRILTVRQSAKCLLALGEYIQRLRALSSLWANRPREPA* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00033 382 Coils Coil 266 286 - -
Pte3g00033 382 ProSiteProfiles DOG1 domain profile. 167 377 IPR025422 GO:0006351|GO:0043565
Pte3g00033 382 FunFam BZIP family transcription factor 96 146 - -
Pte3g00033 382 SUPERFAMILY Leucine zipper domain 97 139 IPR046347 GO:0003700|GO:0006355
Pte3g00033 382 Coils Coil 116 143 - -
Pte3g00033 382 PANTHER TRANSCRIPTION FACTOR TGA9 25 380 - -
Pte3g00033 382 Pfam bZIP transcription factor 95 131 IPR004827 GO:0003700|GO:0006355
Pte3g00033 382 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 95 139 IPR004827 GO:0003700|GO:0006355
Pte3g00033 382 MobiDBLite consensus disorder prediction 74 97 - -
Pte3g00033 382 MobiDBLite consensus disorder prediction 74 92 - -
Pte3g00033 382 Gene3D - 96 146 - -
Pte3g00033 382 Pfam Seed dormancy control 184 259 IPR025422 GO:0006351|GO:0043565
Pte3g00033 382 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 100 115 IPR004827 GO:0003700|GO:0006355
Pte3g00033 382 SMART brlzneu 93 157 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00033 Pte-Chr3 543280 548517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00033 20 383 Calmodulin-binding Proteins AT5G65210 69.730 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pte3g00033 DOG1 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00033 K14431 - gmx:100793353 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00033 3 543280 548517 Pte3g00033 3 543280 548517 RCT