Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00026 ATGGCGGCGGCAGCGGCTGATAGATATAATAATAGTTCTAAGACATCGGATTTATCAGATCCTTGTAGAGAAGAACTGATGAAAGCACCTGAACCTTTTATGAAGAGTGCTTCATTCACCTCTTCCTCCATCGCTTCCTCACCATCTTTTTCTTCATGTCGCCCATCTTCCTCCTCGTTTACTTCATTCTCAAATCCACAGCTCTACCAAAGCCCAGATATCTGGTCACCATCGAGCAACCATATGTTTTCTCAAGGGGTCTCAGGCTACGACCAATTAAGCCTTGAGCATAGTAGTTTTTTGGGGCTTAATCAGCTTACTTCATCTCAGATCCTGCAGATTCAAGCTCAGATCGAGCTCCGACAGCAGCAGCAGCATTTGGCTGCCATAGCTGCAGCTTCACTCCAACATAAGAGGCTTCAGTTGCAGGAGCAAAAACACCACAGCATGAATCACCTCGGCCCAAAATCCATCCCCATGAAGCATGCCAGTTCTCCTCAGAAACCAACAAAACTTTATCGCGGAGTGAGACAGCGGCACTGGGGCAAATGGGTAGCTGAGATCAGACTCCCAAAGAATCGAACCCGTCTCTGGCTTGGCACTTTTGATACGGCTGACGAGGCAGCTTTGGCATATGACAACGCAGCGTACAAGCTCAGGGGAGATTTTGCCCGGTTGAATTTCCCTCATCTGAAGCACGTGGGAGCTCATGTCTATGGCGAATTCGGTGGTTACAAGCCTCTTCATTCCTCTGTGAATGCGAAGCTCCAGGCCATTTGTCAAAGCCTGGCTGATTCGCAGAAACATGGGAAGATAGGAAAGCTACCCTGTACTGTGGCCGACATGATGCCAGGGATCTCATCTCCATCACAAGCAAAGCTTGCCCTTGACGAGGCAAAATTCAAAAGCGAGTGCAAGTCTCCAGAACCGGTAGATTATAAGGCCAATTGTATTATGCTGATAAGTTATTGGACATATACATATGCATGGATCGGATCGGATCGACCTTTTTACTGTTGGAAATGTCATGAGTGA 1035 0.4744 MAAAAADRYNNSSKTSDLSDPCREELMKAPEPFMKSASFTSSSIASSPSFSSCRPSSSSFTSFSNPQLYQSPDIWSPSSNHMFSQGVSGYDQLSLEHSSFLGLNQLTSSQILQIQAQIELRQQQQHLAAIAAASLQHKRLQLQEQKHHSMNHLGPKSIPMKHASSPQKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTADEAALAYDNAAYKLRGDFARLNFPHLKHVGAHVYGEFGGYKPLHSSVNAKLQAICQSLADSQKHGKIGKLPCTVADMMPGISSPSQAKLALDEAKFKSECKSPEPVDYKANCIMLISYWTYTYAWIGSDRPFYCWKCHE* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00026 344 Gene3D AP2/ERF domain 172 230 IPR036955 GO:0003700|GO:0006355
Pte3g00026 344 ProSiteProfiles AP2/ERF domain profile. 172 229 IPR001471 GO:0003700|GO:0006355
Pte3g00026 344 MobiDBLite consensus disorder prediction 1 27 - -
Pte3g00026 344 CDD AP2 171 231 IPR001471 GO:0003700|GO:0006355
Pte3g00026 344 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 287 - -
Pte3g00026 344 Pfam AP2 domain 173 221 IPR001471 GO:0003700|GO:0006355
Pte3g00026 344 PRINTS Ethylene responsive element binding protein signature 195 211 IPR001471 GO:0003700|GO:0006355
Pte3g00026 344 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Pte3g00026 344 SUPERFAMILY DNA-binding domain 172 230 IPR016177 GO:0003677
Pte3g00026 344 MobiDBLite consensus disorder prediction 146 169 - -
Pte3g00026 344 FunFam Ethylene-responsive transcription factor 2 171 230 - -
Pte3g00026 344 SMART rav1_2 172 235 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00026 Pte-Chr3 458120 460174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00026 99 274 AP2-EREBP Transcription Factor Family AT1G78080 60.452 5.11e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte3g00026 AP2 6.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00026 K09286 - qsa:O6P43_030451 311.612