Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00013 ATGGAGGAGGAAGAACATGAGGTCTATGGTGGAGAGATCCCGGACGTAGAAGGGGACGTCGAATCTCACCATGCCGACGTGGATATGTCAGCGGCCGACGAGGACGCCGTCAAGGAGTTGGATGAGATGAAGAAACGGCTGAAGGAGATGGAAGAGGAAGCCGCTGCTCTCCGTGAAATGCAGGCTAAAGTCGAGAAGGAGATGGGTGCAGTTCAAGATCCTGCTAGCTCAGCTGCCTTTCAGGCGAACAAGGAGGAGGTGGATTCTCGGTCAGTTTTTGTTGGAAATGTTGATTACGCTTGCACTCCTGAAGAGGTCCAGCAGCACTTCCAATCGTGTGGTACTGTAAACAGGGTCACTATTCTTACGGACAAGTTTGGGCAGCCGAAGGGATTTGCTTATGTGGAATTTGTTGAACCTGAAGCAGTTCAAGAGGCTCTCGCCCTAAATGAATCTGAACTGCATGGCCGTCAATTGAAGGTTTTGCCCAAGAGAACCAATGTTCCTGGGATGAAGCAGTACCGTCCTGGGCGTTTCAATGCTTATATGGGTTATCGCCCTAGGAGGCCATATCCACCCCCTTATTTTTACTCCCCTTATGGTTATGGGAAGGTTCCGAGGTTCAGGAGGCCAGCTCGTTACATGCCTTACTACTAG 657 0.5068 MEEEEHEVYGGEIPDVEGDVESHHADVDMSAADEDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASSAAFQANKEEVDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEPEAVQEALALNESELHGRQLKVLPKRTNVPGMKQYRPGRFNAYMGYRPRRPYPPPYFYSPYGYGKVPRFRRPARYMPYY* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00013 218 FunFam Polyadenylate-binding protein 1 29 162 - -
Pte3g00013 218 CDD RRM_II_PABPs 91 162 - -
Pte3g00013 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Pte3g00013 218 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 24 172 - -
Pte3g00013 218 SMART rrm1_1 91 162 IPR000504 GO:0003723
Pte3g00013 218 Coils Coil 33 67 - -
Pte3g00013 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Pte3g00013 218 Gene3D - 24 162 IPR012677 -
Pte3g00013 218 SUPERFAMILY RNA-binding domain, RBD 80 189 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00013 Pte-Chr3 332841 337306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00013 91 161 Eukaryotic Initiation Factors Gene Family AT2G36660 36.111 1.86e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00013 K14396 - rcu:8273530 353.984