Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00010 ATGAACAGCTTCAACCCTCCAGCCTTTCTCATCCTAACTTGGCTCTGCCATTTCTATTTTATCTGTGTCCATGCACAGCCTGCTACAGATCAAGCCAAAGGTCCTAGTGCCAGGGTCCGGATTAACATCGACCTCTCACTTTATCTCATCATCGTGGCCCTAGTCTCTGCTTTCACATTCATGGGCCTCTTTTTCTCCCTCTCCCTTCGCTACTGCTGGCGTTCCCAAGCTCGCCTCCAAAACCCCTCCCCCGGTAACAGCTCCTGTTCCCATGGAATAAACCCGACTGTCCTCCACTCCTTCCCGATCCTAGTCTATTCCACCATCAAAGAACATAAGATAGGCAAAGAAGTCCATGAGTGCGCAGTTTGCTTGAGCGAATTCCAGGACTGCGATACCCTCACGTTGTTACCCAAATGCGATCATATATTTCACCCTGATTGCATTCAAGCCTGGCTGGCTTTCCATATCACTTGCCCAGTTTGCCGCGCAAACCTCGCCGAAAACTCGGAATCCTGTCGATGCGGAGCCGCTGTCGTGGGGATCCCCACATCTACAGTAAACCATGCCACTGAGTCTGACCCGTTAAATTTCGACGTGAATATCAGTAGACATGTAACCGATCACAGTGAGAAAGGGCAACAGCAACAACAAGTGGTGATGACCGTGTACCCAGATGAGTGCAACGATCTATGTTCACAACAAACAGCGGTGAATATCCAAGAAGACGGTTGCACCCCTCCAGAAGAATCTAGAATATCGTACAACTTGCATAGGGCGCATTCGACGGGTCACTCTCTGGTTCAACCTGGAAATAATATGGAGCGGTACACGTTGAGATTGCCTGAGGAGGTTCGGAAGCAGCTTAGGATGGATCGCATGAAGCTCCGGCGTTCGGCGAGTTCTGACGTCGTTCTCTTGGGCGAAATAATAATAATTTAA 942 0.4958 MNSFNPPAFLILTWLCHFYFICVHAQPATDQAKGPSARVRINIDLSLYLIIVALVSAFTFMGLFFSLSLRYCWRSQARLQNPSPGNSSCSHGINPTVLHSFPILVYSTIKEHKIGKEVHECAVCLSEFQDCDTLTLLPKCDHIFHPDCIQAWLAFHITCPVCRANLAENSESCRCGAAVVGIPTSTVNHATESDPLNFDVNISRHVTDHSEKGQQQQQVVMTVYPDECNDLCSQQTAVNIQEDGCTPPEESRISYNLHRAHSTGHSLVQPGNNMERYTLRLPEEVRKQLRMDRMKLRRSASSDVVLLGEIIII* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00010 313 SMART ring_2 121 162 IPR001841 -
Pte3g00010 313 SUPERFAMILY RING/U-box 120 169 - -
Pte3g00010 313 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Pte3g00010 313 PANTHER RING FINGER DOMAIN-CONTAINING 30 167 - -
Pte3g00010 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 170 IPR013083 -
Pte3g00010 313 FunFam E3 ubiquitin-protein ligase ATL6 83 169 - -
Pte3g00010 313 Pfam Ring finger domain 120 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00010 Pte-Chr3 261561 262502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00010 46 301 Rapid Response to Elicitors AT3G05200 38.636 3.59e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00010 K10664 - qsa:O6P43_030504 209.149