Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02681 ATGAACAACGAGAATCCACAACCACAATTTCAGCGACATCCTCCACCGGGAAACCGCCGAAGGACTTATGCGCCCGCCAGTTTCCGTCCCTTTCACCATAACTATGGTCACCGCCCTCCTGATTTTCCCGTGACTTACAGCAATCATGGCCCTCAGGGTCCATCTATTACCAGAAAGCTTCCTAATTTCGTTGTTAAATTACGGTATGGCAGTCACCGCTTCAGTGATGCTGATGTTGAGTCCTTAATCACCAATTGCAAGTCTAAACCTGATCATGTTCATCCCTGCCGGAGTGGACCTGTTGCGGCAGTGCTTTATTTCAGTCAGTGGGTCGACACCCTCGAAACCATTGCTTATTTTTGGGAGTCGCGACTCAAGGGGGCTCACGATTTCGACCCAGGCCTTACTCCTCACGTTCTTGTGCCTTCGGATATAGACGAGCTGCATGATCGCCTCCGCAGGATTTTTGCTGAACATGTCAAGGGTTTGATCAATGGCGAACAAGTGAACCGTTGGCTGCAGAAGGGCGAGCGTCTTGCGAAGGAAATTGAAGACCTCTCGGCTTTGCCGAAGAAGGGGATCCGTATGGATGACTACGACGTTCTTTATGCCAAGAGGAAAGGCTTAAAAGTAGAAAAGTTATTAATTGACAAGCGAGTTGCTGAGTTTAAGTCTGCTATGGAGTGTATAGTTTGTCATCTGGAGGATGTAAGGCTGAACGAGTCCGCTGAGGAGTGTCTGCGAGTTGTTAAGTTTGATGGGTGTTTTGATCCTACGCGGCTTCATAATATAATCATACGCGAGCAGAAACGACTTGAGGCCGGCCTACCCATTTATGCTTATCGGCGTGATATTCTTATGCAAGTTCTTAATCAGCAGATAATTGTATTGGTAGGAGAGACAGGTTCAGGGAAGAGCACCCAGTTGGCTCAATTTCTAGCTGATTCTGGTATTGGTGCTGATAATGCCATTGTGTGCACCCAACCCAGGAAAATTGCGGCCCTATCATTGACAAATAGGGTTCAAGAAGAAAGTTGGGGCTGTTATGAAGATAACGCAATCAGATGTTATTCATCATTTTCCTCCTCGGATAAGTTTGCCTCCAAGATAATATATATGACAGACCATTGTTTGCTGCAACACTGCATGGGTGATAAAAATATGTCTGGGATTTCATGCATCATAATTGATGAGGCTCATGAAAGGAGTCTGAATACTGATATTCTCCTGGCATTGCTAAAGGGTCTACTCTGTAGGAGGATTGATTTGCGGCTTATTATCATGTCTGCGACAGCTGATACTAAACAGCTCTCAGATTACTTTTTTGGTTGTGGAATCATTCATGTGGTTGGGAGAAACTTCCGGGTGGATATCCGATATGTTCCTAGTTTCACTGATCGACTTTTGGGCACCAGTGCTACTGGTTCATATGTTTCAGATGTTTTGAGAATGGCAGTTGAGGTTCATAAAACGGAGGAAGACGGTACTATTCTTGCCTTCTTAACTTCACAGGCTGAAGTAGAATGGGCTTGTGAAAAATTTGAAGATCCTTCCGCAAATGCATTGCCTCTACATGGTAAACTTTCTTCTGAGGAGCAATTTAGAGTTTTCCAGAATGTTCCAGGCAAGAGAAAAATTATTTTTGCTACAAATCTGGCAGAGACATCACTTACCATTCCTGGAGTCAAATATGTGATTGATCCTGGAATCGTTAAGGCTAGTAGTTTTGAACCTAGCAGTGGTATGAATATGCTCAAAATTTGCTGGATCAGCCAGAGTTCTGCTAACCAAAGAGCTGGACGTGCTGGAAGAACTGGACCAGGAAGGTGCTATAGACTTTACTCAGAATCGGATTATGGATCGATGTTTCCAAATCAAGAACCCGAGATTCGCAGAGTTCATCTTGGAATAGCTGTTTTGAGAATTCTCGCTCTGGGAGTGAAAAATGTTCAGGAATTTGATTTTGTTGATGCTCCGACGCCCAAAGCGGTTGAAATGGCAATCCAAAATTTAATTGTTTTAGGAGCAGTAAAAGTTAATGATAATATTTGCGAGTTAACTGAAGAAGGTCATCGCTTTGTAAGATTGGGTGTTGAGCCCAGGCTTGGTAAACTGATTCTTAGTTGTTTTGATCATGGTCTACGTAAGGAAGGCCTTGTTCTTGCTGCTGTTATGGCCAATTCCAGTAGCATCTTTTGCAGAGTTGGCAGTGATGGTGATAAATCAAGAGCTGACTGCCGGAAGGTGCAATTTTGCCACCCAAATGGTGATCTCTTTACCCTCTTGTCTGTGTACAAGGAATGGGAAAAGTTACCTCTGGATAAGAGGAGGAATATGTGGTGTTGGGATAACAGCGTCAATGCTAAAGCCATGAGGAGATGCCAAGAAACTATTATGGAATTGGAGTCATGCCTTAAACGCGAACTTCATGTTGTTATTCCAAGTTACTGGGTTTGGAATCCTCATAAAACCTCAGAACATGATGATTACTTGAAAAAGGCCATACTCTCTTCGCTTAGAGATAATGTTGCCATGTACTCTGGTTATGATCAACTTGGTTATGAAGTAGCATTACTTGGAGAACATATTCAACTTCATCCATCATGTTCATTGCGTATCTTTGGCCAGAAGCCTGGTTGGGTTGTTTTTGGTGAGCTTCTATCAGCCTCTAAGGAATATTTAGTCTGTGTAACTGCTTTTGACTATGATTCACTGAATACACTTCACCCTCCTCCCTTGTTCAACATATCCAGGATGGAAGACCGGAAATTGCAATTGAGAGTCTTGACTGGATTTGGCAATACTGTTCTAAAAAGATTTTGTGGAAAGTCCAGTAATAATCTGTTTAATCTTTTATCGCAAATCAGGACTGCTTGTATGGACAACCGAATTGGAATTGAAGTCAATGTTGACCAGAATGTAGTTCAGTTATATGCTGCCTCGCAAGACATGGAAAAGGTGTTTAGGCATGTCGATGATGTTTTGAATTATGAGAGAAAGTGGTTACAAAATGAATGCCTGGAGAAATGTCTGTATCATGGAGCTAATGTTTCAACTGCAGTAGCACTCTTCGGTGCTGGTGCTGAGATAAAACACTTAGAACTTGACCAGCGTTGTTTGTCCATCGATGTGTCTCATTCGCATGCAAATGCAATTGAAGACAAGGAGCTGGTGATGTTTATTGAGAAGAATGCCTCAGGGAGTGTATGTGCTATCCACAAGACTGTAGGCATAAGGCAGGTTATGGATGACAGTCAAAGGTGGGGCAGATTAACATTTCTCTGCCCTGATGATGCTAAAAGAGCTCTAGAGCTGAATGGAGTGGAGTTCTGTGGCTCCTCATTGAAGCTATTTCCTTCTCAAACAACAGTTGCAGCCGATAAATCATATTCTTTCCCTGCTGTTAAGGCAAAGATCTTTTGGCCTCGCAGGTTCAGCAATGGGATTGCGATTGTCAGATGTAACTCCGATGATGTTACCCACATGATAAATGATTTCAATAACCTGGAAATAGGAGGAAGGTCTATCCGCTGTCACCCTAGCAGAAAGTTTCAGGATTCTGTTGTAATAGATCGCCTTGATAAGATGACTTCAGAAGCTGAAATTTTAGATGTTCTAAGAAATGCCACGACTAGAACGATCTTGGATTTCTTTCTATTGAGAGGGGATGCAGTTGCAGATCAACCATGTAAAGCATGTGAGGAAGCACTTCTAAAGGAACTATTGCCTTTTATACCTAAAACCAACCCACGAGCTAGTCCTTGCAGAGTTCAGGTCTTCTCGCCTGAACCTAAGGATGTATTCATGAGAGCTTTGATTACATTTGATGGTAGTATGCATTTAGAGGCGGCAAAGGCGCTAGAGGAAATAGAAGGGAAAGTGTTGCCTGGATTGCTTCCATGGCAGAAGATCAAGTGCCAGCGGTTGTTCAGTAGCACATTGACATTCTCTTCTCACGTCTACCATGTGATAAAGAAGGAATTGGATCCGCTAGTTGTTGGATTTGCTGCTTCAAATGGTACCGAGTGCATCCTAGAGAAGACTGCTAATGGTTTGCATCGTGTGAGGATATCAGCCAATGCTACTAGGAGAGTTGCAGAAATTAGAAGACCTCTGGAAAAGCTAGCAAGAGGGAAAACAATAAACCATGATAGCCTCACGCCTGAAATCCTACAGCTCCTATTTTCCAGAGATGGAATTGAAGTGATGAAATCATTGCAGCAAGAGATGGGAACCTACATTTTGTTTGACAGGCATACCCTTCTGCTAAGGGTGTTTGGTTCTTCAGGTTCGGTGGCCATGACAGAGCAGAAATTGATTCAATCCTTGCTGAGTCTTCATGACAAGAAAAAGCTCATTATCCATCTCCGTGGGGTAGGCCTGCCGCCTGATTTAATGAAGCAGGTAGTCAAGAAATTTGGTCCAGACCTAAGTGGACTAAAAGAGGCAGTACCTGAGGCAAACTTCACTCTTGATACCCGGAGGCAGACAATCTCCATTCATGGTAACAAGGAGTTGAAGGGAAGGGTGGAGGAGAAAATCCTGGAGATTGCTCAAGCGAGTGACTGTTGGGCTGAGAAACTTAATGCTGAAACTGATTGTCCGATTTGCTTGTGCAAAATTGAGGAAGGGTACCGGCTAGAAGGATGTAATCATTTATTTTGTCGACTGTGTCTTGTAGAGCAATTTGAATCTTCCATAAGGGGCCATGATAGTTTTCCCATATGCTGTGCGCAGGATGACTGTGGATGCCCAATTGTTCTTTCAGATTTGAAATATCTTCTGTCAAATGTAAAGCTGGAGGAATTGTTCCGTGCCTCTTTGGACTCGTTTGTTGCATCTAGTGGTGGAAAATATAGGTTCTGTCCTTCTCCTGATTGCCCTTCTATATATCGAGTCGCTGAGCCTGGCACAGATGATACGCCATTTGTATGTGGAGCATGTTATGCAGAGACTTGTACTAGGTGCCACTTAGAATATCACGCATACATATCTTGTGAGAGATACCGGGAGTTCAAGAAGGATCCAGATTTGTCTCTAAAGGAGTGGTCCAAGGGCAAAGATGTCAAGCGCTGCTCGGCATGTGGATTGACAATTGAGAAGATCGATGGCTGCAACCATGTGGAATGCAAGTGTGGGAAGCATGTCTGTTGGGTATGCTTGGATTTCTTTTGCACCAGTGATGATTGTTACGGCCACTTGAGAAATGTACATCGTGCTATATATGAAAACATCTAA 5238 0.4332 MNNENPQPQFQRHPPPGNRRRTYAPASFRPFHHNYGHRPPDFPVTYSNHGPQGPSITRKLPNFVVKLRYGSHRFSDADVESLITNCKSKPDHVHPCRSGPVAAVLYFSQWVDTLETIAYFWESRLKGAHDFDPGLTPHVLVPSDIDELHDRLRRIFAEHVKGLINGEQVNRWLQKGERLAKEIEDLSALPKKGIRMDDYDVLYAKRKGLKVEKLLIDKRVAEFKSAMECIVCHLEDVRLNESAEECLRVVKFDGCFDPTRLHNIIIREQKRLEAGLPIYAYRRDILMQVLNQQIIVLVGETGSGKSTQLAQFLADSGIGADNAIVCTQPRKIAALSLTNRVQEESWGCYEDNAIRCYSSFSSSDKFASKIIYMTDHCLLQHCMGDKNMSGISCIIIDEAHERSLNTDILLALLKGLLCRRIDLRLIIMSATADTKQLSDYFFGCGIIHVVGRNFRVDIRYVPSFTDRLLGTSATGSYVSDVLRMAVEVHKTEEDGTILAFLTSQAEVEWACEKFEDPSANALPLHGKLSSEEQFRVFQNVPGKRKIIFATNLAETSLTIPGVKYVIDPGIVKASSFEPSSGMNMLKICWISQSSANQRAGRAGRTGPGRCYRLYSESDYGSMFPNQEPEIRRVHLGIAVLRILALGVKNVQEFDFVDAPTPKAVEMAIQNLIVLGAVKVNDNICELTEEGHRFVRLGVEPRLGKLILSCFDHGLRKEGLVLAAVMANSSSIFCRVGSDGDKSRADCRKVQFCHPNGDLFTLLSVYKEWEKLPLDKRRNMWCWDNSVNAKAMRRCQETIMELESCLKRELHVVIPSYWVWNPHKTSEHDDYLKKAILSSLRDNVAMYSGYDQLGYEVALLGEHIQLHPSCSLRIFGQKPGWVVFGELLSASKEYLVCVTAFDYDSLNTLHPPPLFNISRMEDRKLQLRVLTGFGNTVLKRFCGKSSNNLFNLLSQIRTACMDNRIGIEVNVDQNVVQLYAASQDMEKVFRHVDDVLNYERKWLQNECLEKCLYHGANVSTAVALFGAGAEIKHLELDQRCLSIDVSHSHANAIEDKELVMFIEKNASGSVCAIHKTVGIRQVMDDSQRWGRLTFLCPDDAKRALELNGVEFCGSSLKLFPSQTTVAADKSYSFPAVKAKIFWPRRFSNGIAIVRCNSDDVTHMINDFNNLEIGGRSIRCHPSRKFQDSVVIDRLDKMTSEAEILDVLRNATTRTILDFFLLRGDAVADQPCKACEEALLKELLPFIPKTNPRASPCRVQVFSPEPKDVFMRALITFDGSMHLEAAKALEEIEGKVLPGLLPWQKIKCQRLFSSTLTFSSHVYHVIKKELDPLVVGFAASNGTECILEKTANGLHRVRISANATRRVAEIRRPLEKLARGKTINHDSLTPEILQLLFSRDGIEVMKSLQQEMGTYILFDRHTLLLRVFGSSGSVAMTEQKLIQSLLSLHDKKKLIIHLRGVGLPPDLMKQVVKKFGPDLSGLKEAVPEANFTLDTRRQTISIHGNKELKGRVEEKILEIAQASDCWAEKLNAETDCPICLCKIEEGYRLEGCNHLFCRLCLVEQFESSIRGHDSFPICCAQDDCGCPIVLSDLKYLLSNVKLEELFRASLDSFVASSGGKYRFCPSPDCPSIYRVAEPGTDDTPFVCGACYAETCTRCHLEYHAYISCERYREFKKDPDLSLKEWSKGKDVKRCSACGLTIEKIDGCNHVECKCGKHVCWVCLDFFCTSDDCYGHLRNVHRAIYENI* 1746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02681 1745 Gene3D - 649 805 - -
Pte2g02681 1745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 480 646 IPR001650 -
Pte2g02681 1745 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1662 1739 - -
Pte2g02681 1745 Gene3D - 1664 1743 - -
Pte2g02681 1745 MobiDBLite consensus disorder prediction 1 24 - -
Pte2g02681 1745 SMART ultradead3 274 459 IPR014001 -
Pte2g02681 1745 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 259 452 - -
Pte2g02681 1745 SMART ha2_5 666 762 IPR007502 GO:0004386
Pte2g02681 1745 CDD BRcat_RBR 1618 1669 - -
Pte2g02681 1745 CDD DEXHc_RHA-like 293 449 - -
Pte2g02681 1745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 450 IPR014001 -
Pte2g02681 1745 ProSitePatterns Zinc finger RING-type signature. 1550 1559 IPR017907 -
Pte2g02681 1745 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 392 401 IPR002464 -
Pte2g02681 1745 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 453 625 - -
Pte2g02681 1745 FunFam RBR-type E3 ubiquitin transferase 649 755 - -
Pte2g02681 1745 Pfam Helicase associated domain (HA2) 667 761 IPR007502 GO:0004386
Pte2g02681 1745 Gene3D - 453 626 IPR027417 -
Pte2g02681 1745 SMART helicmild6 508 606 IPR001650 -
Pte2g02681 1745 PANTHER ATP-DEPENDENT RNA HELICASE 268 913 - -
Pte2g02681 1745 Pfam Helicase conserved C-terminal domain 489 606 IPR001650 -
Pte2g02681 1745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 784 IPR027417 -
Pte2g02681 1745 ProSiteProfiles TRIAD supradomain profile. 1530 1737 IPR044066 -
Pte2g02681 1745 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 831 905 IPR011709 -
Pte2g02681 1745 ProSiteProfiles Zinc finger RING-type profile. 1534 1576 IPR001841 -
Pte2g02681 1745 Pfam IBR domain, a half RING-finger domain 1605 1666 IPR002867 GO:0008270
Pte2g02681 1745 CDD SF2_C_RHA 454 614 - -
Pte2g02681 1745 Gene3D - 261 452 IPR027417 -
Pte2g02681 1745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1529 1611 IPR013083 -
Pte2g02681 1745 SUPERFAMILY RING/U-box 1674 1735 - -
Pte2g02681 1745 SMART ibrneu5 1667 1730 IPR002867 GO:0008270
Pte2g02681 1745 SMART ibrneu5 1601 1666 IPR002867 GO:0008270
Pte2g02681 1745 SUPERFAMILY RING/U-box 1616 1671 - -
Pte2g02681 1745 SUPERFAMILY RING/U-box 1531 1604 - -
Pte2g02681 1745 CDD Rcat_RBR_DEAH12-like 1688 1738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02681 Pte-Chr2 45734011 45740392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02681 1546 1720 ARIADNE family AT3G27710 31.461 3.57e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02681 K12818 - qsa:O6P43_030498 2348.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02681 2 45734011 45740392 Pte2g02681 2 45734011 45740392 RCT