Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte2g02670 | ATGTCAATTCGTCCCTCTAACCCGTCGCCGGCAAACGAAAGTCAACGTCACGCCCAAGTGGAGCTTCCCGTTACTCCTACATTGGACACGGATCGTACACCGGATATCCAGATGGCCCTCCAGAATCTCTCTGATGTCCACAAGAGGATGACTTCTCTGCAATCTTTCCTATCCGAATCCATTAATCGCCACACTGTCGTGTGCAAGAATCAGATGACCATGGTATCTGACCAGATTGCCTCTGTCATCCAAGACATCATACTCAATGGTACAGCTCTCTTATCCTGCTCTTCGACTCAAACTTCTCCAGGAATGTCCGACTTGGCTCAACCATTCGATCGGTCCGGCTCTGAGTGTTTGGATCCGGAGCAGAAATGTGACAAGACGCAGCTGCAGAAGGTGGTGGAAGGGTTGAAAGTGGATGACTTGGAGGATGAGAAGCTGAAAGATGAAGATAATTGTGAAGACTGTGAAGGAGACAGCGAAATCGTGGAGCCGGACGCTATGACATTGATGGCCGAGCACATCCATTTCTGTGAAATTTGTGGTAAAGGGTTCAAGCGCGATGCCAATTTGCGTATGCACATGCGAGCACACGGTAATCAGTTCAAGACTCCTGAAGCATTGGCTAAACCTCCCCATGGATCAATTGGTGAAAGTGCTCGTGTTGGCAAAATTGCACTGTTCTCATGCCCATTTGTTGGGTGCAACAGAAACAAAGCAGACAAAAAGTTTCGGCCTATGAAGTCAGTGATTTGTGTCAGAAATCATTTCAAGCGGAGCCATTGTCCCAAGATGTATTCATGCAATTGTTGCCACAAGAAGAGCTTCTCTGTGCTGTCTGATCTGAGGAGCCATCTCAAGCACTGTGGGGAATCCAAGTGGAAGTGCTCATGTGGGACAACCTTTTCAAGGAAGGATAAGCTCTTTAGACATATGACTTTGTTTGAAGGGCATATGCCTGCTGTTGCTGGAAATGAGGAAGGGAAAATGAAGCTTGTAGAGGCTATGGGGGGAGAAGAGAATGAGGCCTTCAAGGAAAGAGAGTCTGCTTGTCTTAATATTGCCCCCAGTGATTACTGGCATAACCAAAATGGGAATGGGTCACTAGAAACATTGTTTGATGACATCGATGTCTTTGGTTCTATTGAGAATTATTCCTTACAAGATGTTCTGGGATTCTCTCATAACGATAAGGATTTGGGAGGAATTTATTAA | 1218 | 0.4614 | MSIRPSNPSPANESQRHAQVELPVTPTLDTDRTPDIQMALQNLSDVHKRMTSLQSFLSESINRHTVVCKNQMTMVSDQIASVIQDIILNGTALLSCSSTQTSPGMSDLAQPFDRSGSECLDPEQKCDKTQLQKVVEGLKVDDLEDEKLKDEDNCEDCEGDSEIVEPDAMTLMAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPPHGSIGESARVGKIALFSCPFVGCNRNKADKKFRPMKSVICVRNHFKRSHCPKMYSCNCCHKKSFSVLSDLRSHLKHCGESKWKCSCGTTFSRKDKLFRHMTLFEGHMPAVAGNEEGKMKLVEAMGGEENEAFKERESACLNIAPSDYWHNQNGNGSLETLFDDIDVFGSIENYSLQDVLGFSHNDKDLGGIY* | 406 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte2g02670 | 405 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Pte2g02670 | 405 | SMART | c2h2final6 | 267 | 289 | IPR013087 | - | |
Pte2g02670 | 405 | SMART | c2h2final6 | 295 | 319 | IPR013087 | - | |
Pte2g02670 | 405 | SMART | c2h2final6 | 229 | 262 | IPR013087 | - | |
Pte2g02670 | 405 | SMART | c2h2final6 | 177 | 199 | IPR013087 | - | |
Pte2g02670 | 405 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 31 | 344 | IPR044300 | GO:0010044|GO:0010447 | |
Pte2g02670 | 405 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Pte2g02670 | 405 | Gene3D | Classic Zinc Finger | 177 | 200 | - | - | |
Pte2g02670 | 405 | Coils | Coil | 140 | 160 | - | - | |
Pte2g02670 | 405 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 177 | 204 | IPR013087 | - | |
Pte2g02670 | 405 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 179 | 199 | IPR013087 | - | |
Pte2g02670 | 405 | Gene3D | Classic Zinc Finger | 265 | 315 | - | - | |
Pte2g02670 | 405 | SUPERFAMILY | beta-beta-alpha zinc fingers | 168 | 200 | IPR036236 | - | |
Pte2g02670 | 405 | FunFam | Zinc finger 45-like | 174 | 200 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte2g02670 | Pte-Chr2 | 45683358 | 45685638 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte2g02670 | 148 | 323 | C2H2 Transcription Factor Family | AT1G34370 | 57.222 | 3.22e-72 | 226 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pte2g02670 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte2g02670 | - | - | qsa:O6P43_023190 | 382.489 |