Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02670 ATGTCAATTCGTCCCTCTAACCCGTCGCCGGCAAACGAAAGTCAACGTCACGCCCAAGTGGAGCTTCCCGTTACTCCTACATTGGACACGGATCGTACACCGGATATCCAGATGGCCCTCCAGAATCTCTCTGATGTCCACAAGAGGATGACTTCTCTGCAATCTTTCCTATCCGAATCCATTAATCGCCACACTGTCGTGTGCAAGAATCAGATGACCATGGTATCTGACCAGATTGCCTCTGTCATCCAAGACATCATACTCAATGGTACAGCTCTCTTATCCTGCTCTTCGACTCAAACTTCTCCAGGAATGTCCGACTTGGCTCAACCATTCGATCGGTCCGGCTCTGAGTGTTTGGATCCGGAGCAGAAATGTGACAAGACGCAGCTGCAGAAGGTGGTGGAAGGGTTGAAAGTGGATGACTTGGAGGATGAGAAGCTGAAAGATGAAGATAATTGTGAAGACTGTGAAGGAGACAGCGAAATCGTGGAGCCGGACGCTATGACATTGATGGCCGAGCACATCCATTTCTGTGAAATTTGTGGTAAAGGGTTCAAGCGCGATGCCAATTTGCGTATGCACATGCGAGCACACGGTAATCAGTTCAAGACTCCTGAAGCATTGGCTAAACCTCCCCATGGATCAATTGGTGAAAGTGCTCGTGTTGGCAAAATTGCACTGTTCTCATGCCCATTTGTTGGGTGCAACAGAAACAAAGCAGACAAAAAGTTTCGGCCTATGAAGTCAGTGATTTGTGTCAGAAATCATTTCAAGCGGAGCCATTGTCCCAAGATGTATTCATGCAATTGTTGCCACAAGAAGAGCTTCTCTGTGCTGTCTGATCTGAGGAGCCATCTCAAGCACTGTGGGGAATCCAAGTGGAAGTGCTCATGTGGGACAACCTTTTCAAGGAAGGATAAGCTCTTTAGACATATGACTTTGTTTGAAGGGCATATGCCTGCTGTTGCTGGAAATGAGGAAGGGAAAATGAAGCTTGTAGAGGCTATGGGGGGAGAAGAGAATGAGGCCTTCAAGGAAAGAGAGTCTGCTTGTCTTAATATTGCCCCCAGTGATTACTGGCATAACCAAAATGGGAATGGGTCACTAGAAACATTGTTTGATGACATCGATGTCTTTGGTTCTATTGAGAATTATTCCTTACAAGATGTTCTGGGATTCTCTCATAACGATAAGGATTTGGGAGGAATTTATTAA 1218 0.4614 MSIRPSNPSPANESQRHAQVELPVTPTLDTDRTPDIQMALQNLSDVHKRMTSLQSFLSESINRHTVVCKNQMTMVSDQIASVIQDIILNGTALLSCSSTQTSPGMSDLAQPFDRSGSECLDPEQKCDKTQLQKVVEGLKVDDLEDEKLKDEDNCEDCEGDSEIVEPDAMTLMAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPPHGSIGESARVGKIALFSCPFVGCNRNKADKKFRPMKSVICVRNHFKRSHCPKMYSCNCCHKKSFSVLSDLRSHLKHCGESKWKCSCGTTFSRKDKLFRHMTLFEGHMPAVAGNEEGKMKLVEAMGGEENEAFKERESACLNIAPSDYWHNQNGNGSLETLFDDIDVFGSIENYSLQDVLGFSHNDKDLGGIY* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02670 405 MobiDBLite consensus disorder prediction 1 21 - -
Pte2g02670 405 SMART c2h2final6 267 289 IPR013087 -
Pte2g02670 405 SMART c2h2final6 295 319 IPR013087 -
Pte2g02670 405 SMART c2h2final6 229 262 IPR013087 -
Pte2g02670 405 SMART c2h2final6 177 199 IPR013087 -
Pte2g02670 405 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 31 344 IPR044300 GO:0010044|GO:0010447
Pte2g02670 405 MobiDBLite consensus disorder prediction 1 33 - -
Pte2g02670 405 Gene3D Classic Zinc Finger 177 200 - -
Pte2g02670 405 Coils Coil 140 160 - -
Pte2g02670 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 204 IPR013087 -
Pte2g02670 405 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Pte2g02670 405 Gene3D Classic Zinc Finger 265 315 - -
Pte2g02670 405 SUPERFAMILY beta-beta-alpha zinc fingers 168 200 IPR036236 -
Pte2g02670 405 FunFam Zinc finger 45-like 174 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02670 Pte-Chr2 45683358 45685638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02670 148 323 C2H2 Transcription Factor Family AT1G34370 57.222 3.22e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte2g02670 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02670 - - qsa:O6P43_023190 382.489