Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02641 ATGTCTAAATTGTCAGACTTGTGGTTCCGCTTCTTATCCAAGCTGGCCTTCTTCCTGATAATGCAATTTTTTGTTCTTATGGATGCGGCGTCACAATTCAAACTCAGGTTGAAGGCCACTAGACTAAGAATCACTACCATCAAATACCTTCAACTCATCGAGAAGAAGAATCCCACCATCCGTTACACAACTAAGGGCAGGGAACATTTGAAACCAGTGCCTGGGGAATGCAGGGTGTGTTTGTCAGAGTTCGAGGAAGGGGAGAAACTCAGGAAGTTGAAATGTAATCACACATACCACAAAGAATGTCTGGACACTTGGTTGAAAAGATGGCCCACTTGCCCGCTTTGCAGGTCGAAGGTCTTACCGGAAGATATTGTGGCCAAGTACAAACACGAACAGGTGCAAGCAACGCTGGAATCTGAAGGCACTGAGGATATACCTTTTCTTGTTGGCCTTTTCACATGGTGGTAA 474 0.4515 MSKLSDLWFRFLSKLAFFLIMQFFVLMDAASQFKLRLKATRLRITTIKYLQLIEKKNPTIRYTTKGREHLKPVPGECRVCLSEFEEGEKLRKLKCNHTYHKECLDTWLKRWPTCPLCRSKVLPEDIVAKYKHEQVQATLESEGTEDIPFLVGLFTWW* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02641 157 CDD RING-H2_EL5-like 76 118 - -
Pte2g02641 157 PANTHER - 8 147 - -
Pte2g02641 157 ProSiteProfiles Zinc finger RING-type profile. 77 118 IPR001841 -
Pte2g02641 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 123 IPR013083 -
Pte2g02641 157 SMART ring_2 77 117 IPR001841 -
Pte2g02641 157 Pfam Ring finger domain 76 118 IPR001841 -
Pte2g02641 157 SUPERFAMILY RING/U-box 76 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02641 Pte-Chr2 45438403 45439293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02641 75 131 C3H Transcription Factor Family AT1G15100 50.000 2.41e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02641 K16282 - cave:132166423 132.494
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02641 2 45438403 45439293 Pte2g02641 2 45438403 45439293 RCT