Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02618 ATGGACTTCGACGAGTACGATTATCTGGAGAAGGCGGTGGAGGATCTTGACGATCGAGATTCGGCTAAGAAGAGGAATGAATCCACCGAGAAATCTGAACGCGCATACCGGAAGCATGACATCGAAGACGATGTTGACGGAAGTGACCGCAAGAGTAAGCGTTCCAGAGGCGACGAAGAAAATGGAAATAAGAAGGACCGGGACCGCGACCGGGACAGAGACAGAGAACGGTCTGGTCGGGACAAGGACCGTCATAGGAGTAGTAGTGGAAGAGATAGAGATGGAGAGAGAGTGTCGGAGAGAGAAAAGGATAGAGTGCGAGAGAGGAGTAGCAAGGAGAAAGATAAGGACAGGGAGAAGGAGCGAGAGAGAGATAAGGATAAAGAAAGAGAGAAAAGAGAACGAGAGCGAGAGAAGGAGAAAGAGAAAGAGAAGGATAAAGAGAGAAGAGAATCAAGAGATAGAGAAAGAGAAAAGGAAAGGGAGAGAAGGGAAAGGGAGAAGGAAAGGGAGGAGATAGAAAGGTCGCGGAGAAGCAGGAGCCGTTCTGAACGTGACAGAGAGAGAGAACGAGATTTGGAATTGAGAGATGGCAGGAGAAGAGAAAAGAAAGAAGCTGTGGAACCTGAGGCTGATCCAGAAAGGGATCAGAGAACTGTTTTTGCGTATCAGATGCCTTTAAAGGCTACTGAGAGGGATGTCTATGAATTCTTCTCCAAAGCTGGCAAGGTGAGGGATGTTCGGCTGATAATGGATAGGAATTCGAGGCGATCTAAAGGAGTTGGCTACATTGAATTCTTTGATGCTATGTCTGTGCCCATGGCAATTGCTCTTTCTGGCCAGCTGCTTCTCGGACAACCTGTAATGGTTAAACCTTCTGAGGCTGAAAAGAACCTGGTTCAGTCTAATTCTTCCAGTGGGGCTGCAGGTAATGCTGGACAATATGGAGCAGTTGATAGAAAACTGTATGTGGGGAACCTACACTTCAACATGACTGATACTCAACTAAAAGAGATTTTTGAAGCATTTGGTAAGGTTGAGGCTGTGCAACTTCCATTGGATGCAGAGACAGGACATTGCAAGGGTTTTGGATTTGTTCAATTTGCTAATCTAGAGGATGCCAAAGCTGCCCAGAGTCTGAATGGAAAACTGGAGATTGCTGGTAGAACGATTAAGGTCTCATCTGTAACAGATCATGTTGGTACACAAGACACAAATGCCAAATCTGCAGATTTTGATGATGATGAAGGTGGCTTGGCTTTGAATGCTCATTCAAGAGCTATGCTGATGGCAAAACTTGATCGATCTGGCACTGCTACAAGTATTGCTGGGGGCATAGGTGTACCCGTGCTTAATGGTGCTGCCCCTGCTCCACCAGTTATGTTGCCCATCATTGGGCAACCTCCAGTCAATGTACCAGTGCTAAGCACTCCAATTCAACCTAACCCAGCCATTGAACCTGTTGGTACTCCTAGTGAATGTCTATTGCTTAAGAACATGTTTGATCCAACCACGGAGACGGAACCTGATTTTGATGTTGATATTAAAGATGACGTTGAAGAAGAATGTTCTAAATTTGGCCGCGTTAAGCATATTTTTGTGGACAAAAACAGTCCTGGATATGTGTATCTGCGGTTTGAAACAGTGCAAGCAGCAAGTGCCGCTCAGCAAGCTATGCACAACAGATGGTTTGCTCGCAGACCAATTTCAGCCGTGTTCATGCCTCCGCAGTTGTACGAAGCCAAGTTTAAAGGCTAA 1758 0.4602 MDFDEYDYLEKAVEDLDDRDSAKKRNESTEKSERAYRKHDIEDDVDGSDRKSKRSRGDEENGNKKDRDRDRDRDRERSGRDKDRHRSSSGRDRDGERVSEREKDRVRERSSKEKDKDREKERERDKDKEREKREREREKEKEKEKDKERRESRDREREKERERREREKEREEIERSRRSRSRSERDRERERDLELRDGRRREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFFDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNSSSGAAGNAGQYGAVDRKLYVGNLHFNMTDTQLKEIFEAFGKVEAVQLPLDAETGHCKGFGFVQFANLEDAKAAQSLNGKLEIAGRTIKVSSVTDHVGTQDTNAKSADFDDDEGGLALNAHSRAMLMAKLDRSGTATSIAGGIGVPVLNGAAPAPPVMLPIIGQPPVNVPVLSTPIQPNPAIEPVGTPSECLLLKNMFDPTTETEPDFDVDIKDDVEEECSKFGRVKHIFVDKNSPGYVYLRFETVQAASAAQQAMHNRWFARRPISAVFMPPQLYEAKFKG* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02618 585 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 113 583 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pte2g02618 585 Gene3D - 305 412 IPR012677 -
Pte2g02618 585 Gene3D - 488 585 IPR012677 -
Pte2g02618 585 SUPERFAMILY RNA-binding domain, RBD 211 315 IPR035979 GO:0003676
Pte2g02618 585 MobiDBLite consensus disorder prediction 12 217 - -
Pte2g02618 585 Coils Coil 118 186 - -
Pte2g02618 585 SUPERFAMILY RNA-binding domain, RBD 320 574 IPR035979 GO:0003676
Pte2g02618 585 Gene3D - 147 304 IPR012677 -
Pte2g02618 585 CDD RRM3_RBM39_like 492 575 - -
Pte2g02618 585 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 413 511 IPR029123 -
Pte2g02618 585 MobiDBLite consensus disorder prediction 1 218 - -
Pte2g02618 585 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 287 IPR000504 GO:0003723
Pte2g02618 585 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 516 569 IPR000504 GO:0003723
Pte2g02618 585 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 322 392 IPR000504 GO:0003723
Pte2g02618 585 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 398 IPR000504 GO:0003723
Pte2g02618 585 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 295 IPR000504 GO:0003723
Pte2g02618 585 CDD RRM2_RBM23_RBM39 322 399 - -
Pte2g02618 585 SMART rrm1_1 321 394 IPR000504 GO:0003723
Pte2g02618 585 SMART rrm1_1 219 291 IPR000504 GO:0003723
Pte2g02618 585 SMART rrm1_1 494 572 IPR000504 GO:0003723
Pte2g02618 585 NCBIfam splicing factor, CC1-like family 101 583 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pte2g02618 585 CDD RRM1_RBM39_like 219 291 - -
Pte2g02618 585 FunFam Splicing factor CC1-like 147 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02618 Pte-Chr2 45202204 45208048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02618 292 393 Eukaryotic Initiation Factors Gene Family AT4G34110 36.893 4.73e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02618 K13091 - qsa:O6P43_030384 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02618 2 45202204 45208048 Pte3g00049 3 663464 666295 RCT
Pte2g02618 2 45202204 45208048 Pte2g02618 2 45202204 45208048 RCT