Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02610 ATGTCTACTGCTACTGCCACCTCAACCATCAAGCACTTTGAAGAACTTGTTGGAGATTTCTACTCAAGAAGATTACTTCTTCAGAAACCACTCAACCAATCACCAAATTCAGCTTACCCTCCTGCTTCAACTTCAAGTCATCATGGATCAGTTGAATATACTGGAGACAACAATTTCGATGCAAATGTTGTCATGATACTCTCAGTCCTTTTATGTGCTCTAATTTGCTCTCTGGGGTTGAATTCCATCATACGGTGTGCAATGAGGTGCTCAAGTTTAGCAGCCAGCGACTCTTCAGGGAGTAACTCTCCTACTCGATTAGCCAACACAGGAATCAAGCGCAAAGCTCTGAGAGCTTTTACTACTGTGAATTACTCAACTGAGCTAAACCTTCCAGGTTTGGACACAGAGTGTGTCATTTGCCTATCAGAATTCACTAATGGTGACCGTTTGCGCCTTTTGCCAAAGTGCAACCATGGATTTCACATCCGCTGCATTGACAAATGGCTCAGTTCACACTCATCTTGCCCGAAATGCAGACAATGCCTCATTGAGACATGTCAAAAGATTGCTGGATGCAGTCGACCAAGCTCTTCACAGCCAGCAACGCCCATGGCACCGCGTGAGACAATTGTAAGAATTGCACCTTTAGAACCTGAAGGTTTGATTCGTAATTACAGAGAAGGCCAACAATAG 696 0.4411 MSTATATSTIKHFEELVGDFYSRRLLLQKPLNQSPNSAYPPASTSSHHGSVEYTGDNNFDANVVMILSVLLCALICSLGLNSIIRCAMRCSSLAASDSSGSNSPTRLANTGIKRKALRAFTTVNYSTELNLPGLDTECVICLSEFTNGDRLRLLPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIETCQKIAGCSRPSSSQPATPMAPRETIVRIAPLEPEGLIRNYREGQQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02610 231 SMART ring_2 138 179 IPR001841 -
Pte2g02610 231 PANTHER RING-H2 FINGER PROTEIN ATL78 16 222 IPR044602 GO:0016567|GO:0016740
Pte2g02610 231 SUPERFAMILY RING/U-box 118 186 - -
Pte2g02610 231 CDD RING-H2_EL5-like 137 180 - -
Pte2g02610 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 184 IPR013083 -
Pte2g02610 231 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Pte2g02610 231 Pfam Ring finger domain 137 180 IPR001841 -
Pte2g02610 231 FunFam RING-H2 finger protein ATL73 98 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02610 Pte-Chr2 45150557 45151520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02610 24 184 C3H Transcription Factor Family AT3G10910 43.452 3.10e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02610 K19040 - qsa:O6P43_023336 340.117