Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02581 ATGTCTGAGAACAAGAGTACCAGGAAGAAACCCCTGAGTCTCAACGACAGCCATTACCGTCTTCTTCAAGACCTCTCATCTCCTCCCATAACTAAACCCAAGCCCTCTTTTGAGACTCAGGATACCGAAGCCAAGACATCGCAAGTCAAGCTTGAAGGTCGAAATCCTCCGTACGAAGAAATCGCTGATGATACTATTCCACAATTTTCAGCAATCACCGACTTTGATTCTCCTCCTTTGGTACAAGAAAAACAAGTGAAGGCAGATGACTGGGGTCAGTTTTGTCAAGTTTCCCTGAAGCCTGAAGACAAAGACGAACAAGATGATAGAATTGGAATGCCTCGATTCTCTGAACTGACCAACTTCGCCACTGTGCCTAATAAAGAGGTGAATGCCAAGGTTAAGATGGAAGGTCGACGACGCCTATGTAAAATTTCCTCTCGAAATGAAGATATGGCTGAAAAAAAGCTGGAACTCGATGAACCTAAGCATTCTGATCTTACTGATTTTGACTCACCCCTCATCACATCGAATAGTGTCAGTGTTGTGGAAGGTAACGGCAATGAGGCTAGGAATGAAATTAGGGATATCTTGAATGATTTGAATTCAAAGTTTGAGATTTTGTCAATTGAGAGGAAAAAGGTTCCGAAACCAGAGGAGTCCGTTGAAGAGTCATTTTCTTCGCCCAAAAGAAAGAACACAGGTGGAAGGGAGATGTTTGATTTGCCTGATTATGCAAGTGCTGAGTCTTCGTTTTCTTTTACACCTGATTCGTCTGATTGCTTATCGGAGGGAACTACCAATTCTGGTGGCGTCAATAAAACGTTTAAGGATATGGATGGAAAAGGGGAGGTGAGGTGCAAGAGTAGCGTTGAGAGTGCTGTTCCTCGCGTGACTACGAAGCAAGGCACTGAAGGAATGGGGAAAAAATCAGTATTTGAGTCTGTAGTTGCTGCTGATAAGACTTATTTAGAAGCCGATTCTCAGGGTGATAGATTTGTGAAGATGGTAAATGCTAGCAGTAACATGCACGCGGAAGCATCAAAAAATAATGAATCACGTCAGATAACATCGACAGTTGAAAGCCCATTTCTCATTAGAGTTGAAGATGAAAACGACAATGATGATTGTGTAATCGTTAGTGGCACAAAATTTGCCAAGGAAGTGGGTGAAATCGAAGAAGAGGACAATGGATACGTTGGGGTACTTGATGCTGTTTCTCGGGATGAAGAATCTATAACTTTGAATGGTCTGAAGTCCACGTATAAGCTGCCCGGTAAAATAGCAAAGATTTTGTTTCCTCATCAGCGGGAAGGGGTGAGATGGTTATGGTCTCTACATTCTCAGAACAAGGGTGGTATCTTGGGGGATGACATGGGCCTGGGCAAAACAATGCAAATTTGTGCTTTCTTGGCTGGGCTCTTCCATTCAAACTTGATTAAGAGGGCTGTTGTTGTAGCACCGAAAACTTTATTGCCCCATTGGATCAAAGAATTATCAGCAGTTGGTCTTTCTCAGATGATAAGAGAATACTACGGTACAAGCACAAAGGCGCGACAGTATGAGCTTCAGTATATACTAAAGGACAAAGGCGTTCTCTTGACAACATATGACATTGTGCGGAATAACTCAAAGGCTTTGCAGGGGGACTGCCACTATGGCGATGATGGTTGTGAAGATGACTTTGTGTGGGATTACATGATACTAGATGAGGGCCATCTCATAAAGAATCCAAGCACTCAGAGAGCTAAAAGTTTGTATGAGATACCCAGTGCCCATCGAATCATTATTAGTGGCACTCCGTTACAAAATAATCTCAAGGAATTGTGGGCACTGTTTAATTTTTGTTGTCCTGATCTATTGGGTGACAATAAATGGTTCAAGGCCAGATTTGAGTCACACATTCTTCGAGGAAATGAAAAGAATGCTTCTGATAGAGAAAAGCGTGTCGGATCAACAGTTGCAAAGGAGTTAAGAGATCGAATTCAACCATACTTTTTGAGGCGTTTAAAGAGTGAAGTTTTCAATGAAGAAGAGAATAAAACAACTGCCTCCCTTTCCAAGAAAAATGAGATGATTGTTTGGCTACGGTTAACTAGCTGTCAGAGGCAACTTTATGAAGCATTTTTGAATAGTGAGATTGTTCTTTCAGCATTTGATGGCTCACCTTTGGCAGCACTTACGATTTTGAAGAAAATCTGTGATCATCCCCTTCTTTTGACGAAGCGAGCAGCTGAGGATGTATTGGAGGGCATGGATTCAATGTTGAAACCAGATGAAGTTAATATGGCCGAAAAATTAGCAATTCATGTAGCAGATATAGCTGATCCAAGTGCTTTTGAAGCAAGGCATGATGTTTCATGCAAAATTTCTTTCATAATGTCTCTGCTGGATAACTTGATCCCAGATGGCCACCATGTGCTTATCTTCTCTCAAACTCGCAAGATGCTTAATCTTATTCAGGATTCATTAATTTCAGAAGGTTATGAGTTTCAACGCATTGATGGAACTACAAAGCCTAGTGACCGATTAAGAATAGTAAATGATTTTCAAGAAGGTATTGGAGGTCCCATATTTCTCTTGACATCGCAAGTAGGTGGTTTGGGGCTCACTCTCACAAAAGCAGACCGTGTCATTGTGGTTGATCCTGCTTGGAACCCAAGCACGGATAACCAAAGTGTTGATCGTGCATATCGCATTGGTCAAAAGAAGGATGTCCTTGTATACAGACTGATGACATGTGGAACTGTTGAAGAGAAGATATATAGGAAGCAGGTGTACAAGGGTGGGTTGTTTAAAACTGCAACTGAGCACAAAGAACAAATGCGGTATTTTAGTCAGCAGGACCTTAGAGAGCTCTTCAGCCTCCCAAAACAAGGTTTTGATATTTCTCTTACTCAGCAGCAGTTGGATGAAGAACATGATAGCCAGAATTTAGTTGATGAATCTCTTAGGACACATATTGAATTTCTGAAACATCAGGGAATAGCTGGCGTCAGCCATCACAGTTTACTCTTCTCGAAGTCAGCTCCAGTTCAACTTGCAAGTGACGAGGAAGTAATGAGTAGCCACAGAATACGAGCAAATTATACGGGCAACTCATCATCAAGTCCTTCCCTTGAACATCCTGTTGATGGAGGCAACTTTGCTTTCAAACCAAAAGATATTGCGTTACAGAAGAAAGTTTCTTCCCCCGACAGTGGTGGTAAATTGACCGAATCAGAGATCAGAGACAAAATCAAACGGCTTTCGCAAACACTTTCGCACAAGGACATGATTTCGAGACTACCTGATAAGGGAGACAGGTTACGGAGGCAGATTGCTGAGTTGAACTCAGAGCTCCACAAAATCATGATGACTAAAAATACTGAAGTGATTGTGGAAGACATAAGCGGGGCACTCCAAAGCTCCTTGTACGTATAG 3423 0.4198 MSENKSTRKKPLSLNDSHYRLLQDLSSPPITKPKPSFETQDTEAKTSQVKLEGRNPPYEEIADDTIPQFSAITDFDSPPLVQEKQVKADDWGQFCQVSLKPEDKDEQDDRIGMPRFSELTNFATVPNKEVNAKVKMEGRRRLCKISSRNEDMAEKKLELDEPKHSDLTDFDSPLITSNSVSVVEGNGNEARNEIRDILNDLNSKFEILSIERKKVPKPEESVEESFSSPKRKNTGGREMFDLPDYASAESSFSFTPDSSDCLSEGTTNSGGVNKTFKDMDGKGEVRCKSSVESAVPRVTTKQGTEGMGKKSVFESVVAADKTYLEADSQGDRFVKMVNASSNMHAEASKNNESRQITSTVESPFLIRVEDENDNDDCVIVSGTKFAKEVGEIEEEDNGYVGVLDAVSRDEESITLNGLKSTYKLPGKIAKILFPHQREGVRWLWSLHSQNKGGILGDDMGLGKTMQICAFLAGLFHSNLIKRAVVVAPKTLLPHWIKELSAVGLSQMIREYYGTSTKARQYELQYILKDKGVLLTTYDIVRNNSKALQGDCHYGDDGCEDDFVWDYMILDEGHLIKNPSTQRAKSLYEIPSAHRIIISGTPLQNNLKELWALFNFCCPDLLGDNKWFKARFESHILRGNEKNASDREKRVGSTVAKELRDRIQPYFLRRLKSEVFNEEENKTTASLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEVNMAEKLAIHVADIADPSAFEARHDVSCKISFIMSLLDNLIPDGHHVLIFSQTRKMLNLIQDSLISEGYEFQRIDGTTKPSDRLRIVNDFQEGIGGPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQMRYFSQQDLRELFSLPKQGFDISLTQQQLDEEHDSQNLVDESLRTHIEFLKHQGIAGVSHHSLLFSKSAPVQLASDEEVMSSHRIRANYTGNSSSSPSLEHPVDGGNFAFKPKDIALQKKVSSPDSGGKLTESEIRDKIKRLSQTLSHKDMISRLPDKGDRLRRQIAELNSELHKIMMTKNTEVIVEDISGALQSSLYV* 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02581 1140 SMART helicmild6 818 901 IPR001650 -
Pte2g02581 1140 MobiDBLite consensus disorder prediction 1 15 - -
Pte2g02581 1140 MobiDBLite consensus disorder prediction 152 172 - -
Pte2g02581 1140 Pfam Helicase conserved C-terminal domain 789 901 IPR001650 -
Pte2g02581 1140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 685 961 IPR027417 -
Pte2g02581 1140 CDD DEXHc_ERCC6L 432 669 - -
Pte2g02581 1140 FunFam Protein CHROMATIN REMODELING 24 411 689 - -
Pte2g02581 1140 MobiDBLite consensus disorder prediction 19 46 - -
Pte2g02581 1140 CDD SF2_C_SNF 783 912 - -
Pte2g02581 1140 Pfam SNF2-related domain 435 739 IPR000330 GO:0005524|GO:0140658
Pte2g02581 1140 PANTHER SNF2/RAD54 FAMILY MEMBER 129 1115 - -
Pte2g02581 1140 Gene3D - 691 989 IPR027417 -
Pte2g02581 1140 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 444 619 IPR014001 -
Pte2g02581 1140 MobiDBLite consensus disorder prediction 1 65 - -
Pte2g02581 1140 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 792 951 IPR001650 -
Pte2g02581 1140 MobiDBLite consensus disorder prediction 152 168 - -
Pte2g02581 1140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 669 IPR027417 -
Pte2g02581 1140 MobiDBLite consensus disorder prediction 214 237 - -
Pte2g02581 1140 Gene3D - 408 690 IPR038718 -
Pte2g02581 1140 SMART ultradead3 428 630 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02581 Pte-Chr2 44821704 44829770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02581 787 955 RAD5 or RAD16-like Gene Family AT5G22750 33.728 4.77e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte2g02581 SNF2_N 2.8e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02581 K20093 - qsa:O6P43_028613 1350.5