Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02579 ATGGGAGATGAGAGCCATGGCAATGTGCCAAATGGGATCACCAGAGGAAGCCCTGAAAGCCCATGTTTAAAGACTAACACTGCTTCTGGCAATAATGACGACAACAACAACAGCAACCATAACAAAGAACAAGACCGCTTTCTTCCCATAGCCAATGTTGGTCGTATCATGAAAAAAGTGATACCAAGCAATGGGAAAATTTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCAGAATTCATTAGCTTTGTCACTGGGGAAGCTTCTGATAAATGTCAACGAGAAAAGAGGAAGACAATAAATGGAGACGATATCATATGGGCTATCACTACCTTAGGCTTTGAGGATTATGTTGAACCTTTAAAATCTTATCTTCAGAAATACAGAGAGGTCGAAGGAGAGAGACTGAATGTTCCAAAGCAAAACCGTTCTGAACATAAAATACTTCAGCAGGACCCGTCACAGCATCCTCATCCTCATTCTCACGAGGATCATAACAATTTGCCATTACCTAGTGTATATTCTTCAACAAATCTCATTCCTCAGCAGCCATTTAGCTTACAATTCAACCCACCTTCCATTCAAAAACACGTACAGCATCAAGATCACCAGATTGACTCAGTGGGGCATTGGTGA 642 0.4097 MGDESHGNVPNGITRGSPESPCLKTNTASGNNDDNNNSNHNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYREVEGERLNVPKQNRSEHKILQQDPSQHPHPHSHEDHNNLPLPSVYSSTNLIPQQPFSLQFNPPSIQKHVQHQDHQIDSVGHW* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02579 213 FunFam Nuclear transcription factor Y subunit B-3 36 160 - -
Pte2g02579 213 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Pte2g02579 213 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Pte2g02579 213 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Pte2g02579 213 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 162 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte2g02579 213 Gene3D Histone, subunit A 34 170 IPR009072 GO:0046982
Pte2g02579 213 MobiDBLite consensus disorder prediction 10 45 - -
Pte2g02579 213 MobiDBLite consensus disorder prediction 1 46 - -
Pte2g02579 213 MobiDBLite consensus disorder prediction 138 177 - -
Pte2g02579 213 ProSitePatterns NF-YB/HAP3 subunit signature. 78 94 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pte2g02579 213 MobiDBLite consensus disorder prediction 138 167 - -
Pte2g02579 213 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Pte2g02579 213 SUPERFAMILY Histone-fold 44 155 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02579 Pte-Chr2 44811539 44812180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02579 3 214 CCAAT-HAP3 Transcription Factor Family AT2G13570 57.658 1.08e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte2g02579 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02579 K08065 - gmx:100778216 291.967