Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte2g02505 | ATGGAGAAATCTGAGGAGAGCAGAGAAAGACCTGTTTTGAAAGACATTAGACGTTATTACTGTGAATACTGTGGCATATGCAGGTCGAAGAAGACCTTGATTGCCTCACATATTAGCATTCATCACAAGGATGAAAGTCAAAAGCAAAAGGTTAGTGGCGATGGAGAGCCGCAGGTTGTAAAATCTAACACTTGTGATGAATGTGGTGCTTGTTTCAAGAAACCTGCATACTTGATGCAGCATAAGCAAAGTCACTCCCTGGAGAGGCCATATAAATGTCATATGGATGGTTGTCATTCATGTTTTAGAAGAAAAGACCACTTGACTCGCCACCTGGTACAGCATGGGGGAAAGCTCTATAAGTGTCCCATTGAGAATTGCAACAAGGATTTTAATTTGGAGAGCAACATGAAAAGACATGTCAGAGAATTGCATGATGAATGTGCCTCATCCACCAAAAATAGAGGTCCGAAGATATTTGTCTGCCCAGAGAGTGGTTGTGGAAAGGCTTTCAAGTATGCTTCGAAGTTACGAAAGCATGAGGATACTCACATTAAGCTGGAGTCAGTAGAGGCCATTTGTTTAGAACCTGATTGTATGAAAACATTTGCAAACACAAAATGCCTTAGGGCACATGTTCAATCGTGCCATGGATATATGACTTGTGAGATTTGTGGGCAGAGACAATTGAAAAAGAATATGAAGCGACACCTCTATATACATGAAACTGATGGTTCCTTGGAGAAAATTAAATGTGAATTCGAGGGATGCCTCCTAGAATTCTCAAATATATCAAATCTCCGGACACATGTGAAGGCTGTGCATTTTAAAGAAAAGCCTTTTGTCTGTGGCTTTTCTGGCTGTCCAATGAAATTCTCTTACAAACATGTGAGAGACAACCACGAGAAAAGGCATTTTTATTCCTCTGGAGATTTCGTGGAGTCTGACTTGCAATTCCAATCGAGACCTCGTGGTGGTAGGAAGAGAACTTGCCCAAATGTGGAAATGTTGATAAGGAAGAGGGTTACTCCACCAAGTCAATGGGAATCTTGGCTACTTGGCCGTGAATCTGACTAA | 1077 | 0.4132 | MEKSEESRERPVLKDIRRYYCEYCGICRSKKTLIASHISIHHKDESQKQKVSGDGEPQVVKSNTCDECGACFKKPAYLMQHKQSHSLERPYKCHMDGCHSCFRRKDHLTRHLVQHGGKLYKCPIENCNKDFNLESNMKRHVRELHDECASSTKNRGPKIFVCPESGCGKAFKYASKLRKHEDTHIKLESVEAICLEPDCMKTFANTKCLRAHVQSCHGYMTCEICGQRQLKKNMKRHLYIHETDGSLEKIKCEFEGCLLEFSNISNLRTHVKAVHFKEKPFVCGFSGCPMKFSYKHVRDNHEKRHFYSSGDFVESDLQFQSRPRGGRKRTCPNVEMLIRKRVTPPSQWESWLLGRESD* | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte2g02505 | 358 | Gene3D | Classic Zinc Finger | 3 | 91 | - | - | |
| Pte2g02505 | 358 | Gene3D | Classic Zinc Finger | 119 | 146 | - | - | |
| Pte2g02505 | 358 | Gene3D | Classic Zinc Finger | 157 | 184 | - | - | |
| Pte2g02505 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 162 | 184 | IPR013087 | - | |
| Pte2g02505 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 122 | 145 | IPR013087 | - | |
| Pte2g02505 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
| Pte2g02505 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 120 | 145 | IPR013087 | - | |
| Pte2g02505 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 118 | 184 | IPR036236 | - | |
| Pte2g02505 | 358 | PANTHER | ZINC FINGER PROTEIN | 5 | 343 | - | - | |
| Pte2g02505 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 19 | 46 | IPR013087 | - | |
| Pte2g02505 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 72 | 123 | IPR036236 | - | |
| Pte2g02505 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 283 | 305 | IPR013087 | - | |
| Pte2g02505 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 93 | 115 | IPR013087 | - | |
| Pte2g02505 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 231 | 287 | IPR036236 | - | |
| Pte2g02505 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 250 | 280 | IPR013087 | - | |
| Pte2g02505 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 90 | IPR013087 | - | |
| Pte2g02505 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 160 | 189 | IPR013087 | - | |
| Pte2g02505 | 358 | Pfam | Zinc finger, C2H2 type | 120 | 145 | IPR013087 | - | |
| Pte2g02505 | 358 | Pfam | Zinc finger, C2H2 type | 160 | 184 | IPR013087 | - | |
| Pte2g02505 | 358 | Pfam | Zinc finger, C2H2 type | 64 | 85 | IPR013087 | - | |
| Pte2g02505 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 194 | 217 | IPR013087 | - | |
| Pte2g02505 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 91 | 120 | IPR013087 | - | |
| Pte2g02505 | 358 | Gene3D | Classic Zinc Finger | 246 | 322 | - | - | |
| Pte2g02505 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 252 | 275 | IPR013087 | - | |
| Pte2g02505 | 358 | Gene3D | Classic Zinc Finger | 92 | 118 | - | - | |
| Pte2g02505 | 358 | SMART | c2h2final6 | 19 | 41 | IPR013087 | - | |
| Pte2g02505 | 358 | SMART | c2h2final6 | 160 | 184 | IPR013087 | - | |
| Pte2g02505 | 358 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - | |
| Pte2g02505 | 358 | SMART | c2h2final6 | 120 | 145 | IPR013087 | - | |
| Pte2g02505 | 358 | SMART | c2h2final6 | 220 | 241 | IPR013087 | - | |
| Pte2g02505 | 358 | SMART | c2h2final6 | 192 | 217 | IPR013087 | - | |
| Pte2g02505 | 358 | SMART | c2h2final6 | 91 | 115 | IPR013087 | - | |
| Pte2g02505 | 358 | SMART | c2h2final6 | 281 | 305 | IPR013087 | - | |
| Pte2g02505 | 358 | SMART | c2h2final6 | 250 | 275 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte2g02505 | Pte-Chr2 | 44242056 | 44245369 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte2g02505 | 87 | 307 | C2H2 Transcription Factor Family | AT1G72050 | 43.956 | 4.04e-76 | 236 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Pte2g02505 | zf-C2H2 | 0.0031 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte2g02505 | K09191 | - | qsa:O6P43_001489 | 538.88 |