Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02488 ATGAAAGCTGCTGAGACGGACCCTGTTCACTTCTCAAACCAGCTCATATCATCTCTACTGGAACAAATCCCACTCATTCAAAATTTCAAAGGTAAATGGTCTGTTGTCAGAGCTAAGCTCACGGATCTTCAGACCCAATTGGCCGATTTCTCTGCCGAGTTACCTAATTCTAATTGTGTTTCCAACACAATCTCCGTTGACTTCATCCACTCCATTCCCCATACCCTTAACGACGCCGTCTTGCTCGCTCAGAACTGCCAGTGTTCTAATCTCTCTCACGGAAAGCTCAAAACTCAGAGTGACATCGACTCGCTTTTGGCCAAGCTCGATCGCCAAGTCAAAGATTGCGAGATTTTGGTCAGGAGTGGAATTCTAAGTGAAGGCGCCGTTTCCGGGTTGTCCAAGGGGGAGACCGTACGATCCGAGTCGAGGAACTTGATAACCCGTTTGCAGATTGGAAGCGCGGAGTCTAGGAACTCGGCCATTGACTCCCTGCTTGGTTTGCTTCAAGAAGATGATAAGAACGTGATGATTGCCGTGGCTCAGGGCGTGGTTCCCGTGCTCGTGCGACTACTGGATTCGAGCTCCGCTGAAATGAAAGAGAAGACGGTGGCTGCACTATCTAGGGTTTCAATGGTTGACAGTAGCAAGAATGTGCTGGTCGCTGAAGGTTTGTTGCTCCTGAATCAATTGCTTAGGGTACTTGATTCGGGTAGTGGTTTTGCCAAAGAGAAAGCTTGCGTAGCTATTCAAGCTCTGAGCTTTTCCAAGGAGAACGCAAGAGCAATTGGGTCTAGAGGTGGAATTGGTTCTCTATTGGAGATTTGCCAAGCAGGCACACCTGGTTCTCAAGCGTCGGCCGCAGGGGTATTGAGAAATCTAGCAGTTTTTCCTGAAATTAGAGAAAATTTCATTGAGGAAAATACGGTTGTTATCCTTTTGGGACTTGCTGCGTCAGGAACTTCATTAGCCAAGGAAAATGCAATCGGATGTTTGGCTAATTTGGTTTGTAATGAAGAAAGTCTGAAACTTTTGGTCTTTAAGAAGGGAGGAATTGAATGTTTGAAGAATTACTGGGACTCTGCTCCAGCAATTCAGAGTCTTGAAGTTGCAGCTGAATTGCTAAGTCACTTGGTTTCCTGCCCACCAATTGGTGAAGTTCTTATTTCTGCGGGTTTTATATATCGACTTGTTGGAATTTTGAATAGTGGGGTGTTGGGTGTGAGAATTGCAGCAGCTCGAGCTGTTCATGCTTTGGGAGCCAGCTCCAAAACTAAAAAAGAGTTGGGTGACTGTGGTTGCATCACCCCTTTAATAAAAATGCTCGAGGGTAAAGCTGTGGAAGAGAAAGAAGCGGCAGCTAAGGCATTGTCAACTCTTTTGCTTTGCACAAGTAATAGAAGGATTTTTCGCAAGGATGAAAGGGGGATAATGAGTACAGTTCAGCTTCTAGATCATTCCATACAGAATTTGGATAAGAAATACCCAGTTTCAGTTCTTGCCTCACTTGTGCATTCAAAGAAATCCAGAAAACAAATAGTTGCAGCTGGTGCTTGTGTATATATTCAAAAACTAGTTGAGATGGATATCGAAGGATCTAAAAAACTCTCGGAAAGCCTTGGTCGCAGCAAAATATGGGGAGTTTTCTCAAGGCCTTAG 1659 0.4491 MKAAETDPVHFSNQLISSLLEQIPLIQNFKGKWSVVRAKLTDLQTQLADFSAELPNSNCVSNTISVDFIHSIPHTLNDAVLLAQNCQCSNLSHGKLKTQSDIDSLLAKLDRQVKDCEILVRSGILSEGAVSGLSKGETVRSESRNLITRLQIGSAESRNSAIDSLLGLLQEDDKNVMIAVAQGVVPVLVRLLDSSSAEMKEKTVAALSRVSMVDSSKNVLVAEGLLLLNQLLRVLDSGSGFAKEKACVAIQALSFSKENARAIGSRGGIGSLLEICQAGTPGSQASAAGVLRNLAVFPEIRENFIEENTVVILLGLAASGTSLAKENAIGCLANLVCNEESLKLLVFKKGGIECLKNYWDSAPAIQSLEVAAELLSHLVSCPPIGEVLISAGFIYRLVGILNSGVLGVRIAAARAVHALGASSKTKKELGDCGCITPLIKMLEGKAVEEKEAAAKALSTLLLCTSNRRIFRKDERGIMSTVQLLDHSIQNLDKKYPVSVLASLVHSKKSRKQIVAAGACVYIQKLVEMDIEGSKKLSESLGRSKIWGVFSRP* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02488 552 Gene3D - 384 537 IPR011989 -
Pte2g02488 552 Pfam Armadillo/beta-catenin-like repeat 172 209 IPR000225 GO:0005515
Pte2g02488 552 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 550 - -
Pte2g02488 552 Gene3D - 106 368 IPR011989 -
Pte2g02488 552 SUPERFAMILY ARM repeat 145 490 IPR016024 -
Pte2g02488 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 225 IPR000225 GO:0005515
Pte2g02488 552 SMART arm_5 256 296 IPR000225 GO:0005515
Pte2g02488 552 SMART arm_5 172 212 IPR000225 GO:0005515
Pte2g02488 552 SMART arm_5 422 462 IPR000225 GO:0005515
Pte2g02488 552 SMART arm_5 297 337 IPR000225 GO:0005515
Pte2g02488 552 SMART arm_5 381 421 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02488 Pte-Chr2 44117269 44119688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02488 139 409 U-box Gene Family AT2G23140 26.937 9.78e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02488 - - qsa:O6P43_030678 776.163