Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02474 ATGATTTCTTCATTGATTGCCTTTTTCTCGAGCTTTTATCTCATCAACTGTCATTTTTCTTCACAGCTGTCTGATCTCGTTCCAATTTCTTCTTATTTTGATCAGCATAAAGGCAAAGAAGGTCGAGGCTGGATAAGAATAGTCATCGATCTACGAAGGAGTCTCTTCATGGACTGGGATTTTAAAGCATCTTGGGATTTGACTGAATTAGAGCAAGCGACTTTGCCCAACATAGGAAGAGTAAATGCTACTGCTAGATATGGAGTTACCAGAACTGAAGGTGACTTCTCAGTTAACCTGATGCTTGGTGAGGTGGGTAATACCAATAGTTATGTGTCTCTGCAGAAGTGGAAGGAAAGTGGGGTTTCAAAAACGGAACCTTCAACTTCACGATCGTCCAAGAGAGCACGAGCACTTGATAATGGAACTCAGGCTGTGGCATGCCTTGTTGACGGGTGTAATTTAGATCTTAGTAGTTGTAGGGACTACCATAGACGCCACAAGGTCTGTGAACTCCACTCCAAAACTCCCCAGGTTACTGTGGGTGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCCGGTTCCATTTGCTTGAGGAGTTTGATGAAGGGAAACGAAGCTGCAGGAAGCGTTTAGATGAACACAACCGAAGGCGAAGAAAACCTCAGCCAGAATCAATCACGAGGGCTGCAGCATTTTTGTCCACTTATCAAGGGAGGCAGTTGTTGCCATTAGCAACCTCACATGTCTATCCTTCGACGTCTCTGGGGAATTCTTCTTGGACTAGAGTTGCGCCTTCTAAGGCAGATGCGAGGCTGCAAAACCAGCATCAACAGTTATACTTAGTTGACAAACAGAGCATGTTCATGAGATCGTCAGACATGAGCTACAGAGAAAAAAAGCAGTACAAATTTCTGCAAGAGGAGAATCCTTCTTTGAGCAACCAATGTAGTAATCCTCTTCAAGATTCTCCTAGTCAGTCAACCAGCATTAGACAAAAAATTTTCTGCAATGGAATCACTTGCCAAGCTCACGAGTCACATGGTGCTCTCTCTCTTCTGTCATCACCACAGAAGCAGGCATTTAAGGTGCTGCCTGAGACTCAGCCCTTAGGCCTGAGCTTGCATGACCACAATTTCGCGTCGTCGGTTGACTCGATGATGGTTACCCCTGGAGCCGGCGGTTCGAATCTGCATGGCCCAGGGATATATAACATGGGAACTGAAAGAATCACAAGGCACTGA 1245 0.4538 MISSLIAFFSSFYLINCHFSSQLSDLVPISSYFDQHKGKEGRGWIRIVIDLRRSLFMDWDFKASWDLTELEQATLPNIGRVNATARYGVTRTEGDFSVNLMLGEVGNTNSYVSLQKWKESGVSKTEPSTSRSSKRARALDNGTQAVACLVDGCNLDLSSCRDYHRRHKVCELHSKTPQVTVGGQKQRFCQQCSRFHLLEEFDEGKRSCRKRLDEHNRRRRKPQPESITRAAAFLSTYQGRQLLPLATSHVYPSTSLGNSSWTRVAPSKADARLQNQHQQLYLVDKQSMFMRSSDMSYREKKQYKFLQEENPSLSNQCSNPLQDSPSQSTSIRQKIFCNGITCQAHESHGALSLLSSPQKQAFKVLPETQPLGLSLHDHNFASSVDSMMVTPGAGGSNLHGPGIYNMGTERITRH* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02474 414 Gene3D - 139 209 IPR036893 GO:0003677|GO:0005634
Pte2g02474 414 Pfam SBP domain 148 221 IPR004333 GO:0003677
Pte2g02474 414 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Pte2g02474 414 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 106 359 IPR044817 GO:0003677
Pte2g02474 414 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
Pte2g02474 414 SUPERFAMILY SBT domain 146 227 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02474 Pte-Chr2 43984356 43987050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02474 57 312 SBP-box Gene Family AT5G50670 49.458 9.12e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte2g02474 SBP 8.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02474 - - qsa:O6P43_023553 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02474 2 43984356 43987050 Pte2g02474 2 43984356 43987050 RCT