Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02471 ATGGACACCAACCAACAAGCCCAGTCTTCCCCGTATCCACCTCAACCCCCAACAGCTGCTACCCCTTCATTTCACAACCTCATCCACCAGCAGCAGCAGCAGCTCCAGATGTTTTGGACCTACCAGCGTCAAGAAATCGAGCATGTCAATGATTTTAAAAACCACCAGCTCCCATTGGCTCGCATCAAGAAGATCATGAAGGCGGACGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATCTTGTTTGCCAAGGCGTGCGAGCTCTTCATCCTCGAGCTCACTATCCGATCTTGGCTTCATGCCGAGGAGAACAAGAGGAGGACCCTTCAGAAGAACGATATAGCCGCCGCCATCACCAGGACCGACATCTTCGATTTTCTGGTCGATATTGTCCCCAGGGATGAGATCAAGGACGAGGCTTGCCTTGGTGCCATGGTTGGCGCCACTGCCAGTGGAGTTCCTTACTACTACCCTCCAGTGGGACAACCAGCTGGTCCTCCTCCTCCTGGCATGATGATTGGACGCCCTGCTATGGACCCCTCTGGCATGTACCCACAACATCCCTCTCAGGCTTGGCAGTCAGTTTGGCAGACCACTGCTGAGGACGGCTCCTACGGGAGCGGAGGGAGCACTGGCCAGGTGAATCTTGATGGTCAAAGGTATGCATAA 672 0.5476 MDTNQQAQSSPYPPQPPTAATPSFHNLIHQQQQQLQMFWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEACLGAMVGATASGVPYYYPPVGQPAGPPPPGMMIGRPAMDPSGMYPQHPSQAWQSVWQTTAEDGSYGSGGSTGQVNLDGQRYA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02471 223 MobiDBLite consensus disorder prediction 1 21 - -
Pte2g02471 223 Gene3D Histone, subunit A 22 134 IPR009072 GO:0046982
Pte2g02471 223 MobiDBLite consensus disorder prediction 201 223 - -
Pte2g02471 223 SUPERFAMILY Histone-fold 11 128 IPR009072 GO:0046982
Pte2g02471 223 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 30 160 - -
Pte2g02471 223 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
Pte2g02471 223 Pfam Core histone H2A/H2B/H3/H4 23 119 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02471 Pte-Chr2 43973881 43977169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02471 23 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 84.804 1.53e-106 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pte2g02471 Histone 9.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02471 - - pcin:129320575 325.094