Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02453 ATGGAGGACTCTGTCCAACGCAAGATGGAGCAATTTTATGAAGGTTCTGATGGACCTCCTCTTCGTGTTCTTCCTATTGGAGGCCTTGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAATTATGATCGTTATATTCTCATCGATAGTGGTGTCATGTTTCCAGGCTACGAGGAACTTGGGGTCCAAAAAATAATACCTGACACCACATTTATCAAAAGATGGAAACACAAAATTGAAGCAGTTGTTATAACGCATGGCCATGAAGATCATATTGGCGCCCTGCCTTGGGTTATTCCAGCCTTGGATTCTCATACTCCTATATTTGCAACTTCATTCACAATGGAGATTGACGAAACACCATTGGATGGCAAAGTTTTTGATCGTGAAACTTTAGAGCAGCTATCAAAAGAAGGAGTAACGCTGATGATGAGTGACTCAACAAATGTTCAGTCCCCTGGAAGGACACTTAGTGAAGCTACTGTGGCTGATGCGCTCTTAACGCATATTTCAAGTGCAAAGGGAAGGGTCATCACAACCCAATTTGCATCAAACATACATCGTCTAGGAAGTGTGAAAGCAGCTGCTGATTTAACTGGGAGAAAATTGGTATTTGTTGGCATGTCCTTAAGGACCTACCTAGAAGCAGCTTGGAAGGATGGAAAGGCACCGATAGACCCATCCACATTGGTAAAAGTAGAAGATATTGATTCATATGCTCCACAGGACCTGATAATTGTTACTACAGGTTCTCAAGCAGAACCATGCGCCGCCCTAAATCTTGCATCTTATGGAAGTAGTCATGCTTTAAAATTGACAAAGGAAGATGTAATTCTATATTCTGCAAAGATGATCCCTGGTAACAAAACTCGAGTGATGAAAATGATGAACCGAATTTCAGAGATTGGATCATCAATAGTTATGGGGAGGAATGAAGGGCTGCACACATCTGGTCATGGATATCGTGGAGAACTGGAAGAAGTGCTCAAAATTGTAAAGCCACAACACTTCCTCCCCATACATGGTGAACTTTTGTTCCTGAAGGAGCATGAATTATTGGGAAAGTCAACTGGCATTCGACACACTACTGTTATCAAGAATGGTGAAATGCTTGGTGTTTCTCATCTAAGAAACAGAAAAGTTCAATCAAACGGTTTCATCGCTCTGGGGAAAGAAAACTTGCAGCTGGAGTATAGTGATGGTGATAAAGCATTTGGCACTTCAACTGAACTCTGTATTGACGAAAGATTAAAAATTGCAGTAGATGGCATCATAGTGGTCAGCATGGAAATTTGTCGTCCTGAAAATATAGATAGATTGGTGGAAAATACTTTAAAAGGAAATATACGAATCACCACAAGATGCTTATGGCTTGACAAAGGGAAGCTTCTAGATGCACTTCATAAAGCTGCTCATGCTGCACTGTCAAGCTGCCCTGTGAACTGTCCTTTAACCCACATGGAAAGAACTGTGGCAGAAGTATTGAGGAAGATGGTGAGAAAGTACAGTGGTAAGAGGCCTGAAGTCATTTCTGTTGCTGTAGAAAATCCAGCAGCTGTTCTGGCCAATGAAGTGAACATCAGATTGGCTGGCAAATCATCTGTAGGTCTTGGGATACCATCACTTAGAAAACCAGTGGATGGACACCCCAAAGAAAAGATGGTCAGAGAAAAAAAAGTGGAGGAACTCCCCTTGAGCTTGGGAAAAAACACTCAAAAATTAGACGATGATGACATACTTTTTGAGGACTTGCCGGTGGAAGACGATGCAACTAGAGCACCTGAGTTTTCTGATCCGGGCGAATTAGAAAAGTTCTGTAAAAAACATACCTCATCCTCGCCTGTTGAGAAGACAATAAAGGCAAACAGTGGTTATGTTGCAAAGAGGGAGCAAATGGCAGAGGCCAAGAAAGATGGTTCTCAAATTGAAGCTGAGAGTTCTCGACCAAAGGCTTCCATGACATTAGAAAGGAAAAAGTGGAAGCCTGAAGAAGTTAAGAAGCTGATTAATCTACGTGGAGAATTGAATGATAGGTTTCAAGTAGTGAAGGGGAGAATGGCTCATTGGGAAGAGATATCAGGAAAACTGTTGTTGGATGGGATCAACAGAAGTCCAGGGCAATGTAAATCTCGATGGACTTCTTTACTTCGACGGTATCAGGAGATAAAAGATGCGAAGGGAAGTAAGAAAAATTGGCCCTATTATGAGGACATTTTTAGAGCTCTGTCTTCCTCGGACAACTTGGCAACCAATTGA 2256 0.4184 MEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDSGVMFPGYEELGVQKIIPDTTFIKRWKHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFATSFTMEIDETPLDGKVFDRETLEQLSKEGVTLMMSDSTNVQSPGRTLSEATVADALLTHISSAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPIDPSTLVKVEDIDSYAPQDLIIVTTGSQAEPCAALNLASYGSSHALKLTKEDVILYSAKMIPGNKTRVMKMMNRISEIGSSIVMGRNEGLHTSGHGYRGELEEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRKVQSNGFIALGKENLQLEYSDGDKAFGTSTELCIDERLKIAVDGIIVVSMEICRPENIDRLVENTLKGNIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLTHMERTVAEVLRKMVRKYSGKRPEVISVAVENPAAVLANEVNIRLAGKSSVGLGIPSLRKPVDGHPKEKMVREKKVEELPLSLGKNTQKLDDDDILFEDLPVEDDATRAPEFSDPGELEKFCKKHTSSSPVEKTIKANSGYVAKREQMAEAKKDGSQIEAESSRPKASMTLERKKWKPEEVKKLINLRGELNDRFQVVKGRMAHWEEISGKLLLDGINRSPGQCKSRWTSLLRRYQEIKDAKGSKKNWPYYEDIFRALSSSDNLATN* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02453 751 PANTHER RIBONUCLEASE J 117 750 - -
Pte2g02453 751 Pfam Myb/SANT-like DNA-binding domain 657 738 IPR044822 -
Pte2g02453 751 Gene3D - 117 161 IPR036866 -
Pte2g02453 751 Gene3D - 6 116 IPR036866 -
Pte2g02453 751 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 313 355 IPR011108 -
Pte2g02453 751 Gene3D - 660 721 - -
Pte2g02453 751 CDD GT1 658 723 - -
Pte2g02453 751 SMART sant 656 718 IPR001005 -
Pte2g02453 751 MobiDBLite consensus disorder prediction 634 655 - -
Pte2g02453 751 SUPERFAMILY Metallo-hydrolase/oxidoreductase 21 371 IPR036866 -
Pte2g02453 751 SUPERFAMILY Homeodomain-like 656 718 IPR009057 -
Pte2g02453 751 SMART Lactamase_B_5a 33 208 IPR001279 -
Pte2g02453 751 Pfam Metallo-beta-lactamase superfamily 35 103 IPR001279 -
Pte2g02453 751 CDD RNaseJ_MBL-fold 24 371 - -
Pte2g02453 751 Gene3D - 162 316 IPR042173 -
Pte2g02453 751 ProSiteProfiles Myb-like domain profile. 652 716 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02453 Pte-Chr2 43835165 43847567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02453 659 738 Trihelix Transcription Factor Family AT2G38250 37.805 3.05e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pte2g02453 Myb_DNA-bind_4 7.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02453 - - qsa:O6P43_022564 907.516